Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09745 and PS417_09750 are separated by 97 nucleotides PS417_09750 and PS417_09755 are separated by 500 nucleotides
PS417_09745: PS417_09745 - peptide ABC transporter substrate-binding protein, at 2,110,829 to 2,111,779
_09745
PS417_09750: PS417_09750 - amino acid ABC transporter substrate-binding protein, at 2,111,877 to 2,114,282
_09750
PS417_09755: PS417_09755 - hypothetical protein, at 2,114,783 to 2,115,316
_09755
Position (kb)
2111
2112
2113
2114
2115 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2110.928 kb on - strand, within PS417_09745 at 2111.141 kb on + strand, within PS417_09745 at 2111.430 kb on + strand, within PS417_09745 at 2111.638 kb on + strand, within PS417_09745 at 2111.639 kb on - strand, within PS417_09745 at 2111.639 kb on - strand, within PS417_09745 at 2111.867 kb on + strand at 2111.868 kb on - strand at 2111.868 kb on - strand at 2111.903 kb on + strand at 2112.391 kb on + strand, within PS417_09750 at 2112.391 kb on + strand, within PS417_09750 at 2112.392 kb on - strand, within PS417_09750 at 2112.392 kb on - strand, within PS417_09750 at 2112.449 kb on - strand at 2112.903 kb on + strand, within PS417_09750 at 2112.904 kb on - strand, within PS417_09750 at 2112.907 kb on - strand, within PS417_09750 at 2113.027 kb on - strand, within PS417_09750 at 2113.071 kb on + strand, within PS417_09750 at 2113.072 kb on - strand, within PS417_09750 at 2113.075 kb on - strand, within PS417_09750 at 2113.075 kb on - strand, within PS417_09750 at 2113.097 kb on + strand, within PS417_09750 at 2113.146 kb on + strand, within PS417_09750 at 2113.146 kb on + strand, within PS417_09750 at 2113.147 kb on - strand, within PS417_09750 at 2113.147 kb on - strand, within PS417_09750 at 2113.147 kb on - strand at 2113.150 kb on - strand, within PS417_09750 at 2113.320 kb on + strand, within PS417_09750 at 2113.360 kb on - strand, within PS417_09750 at 2113.360 kb on - strand, within PS417_09750 at 2113.360 kb on - strand, within PS417_09750 at 2113.360 kb on - strand, within PS417_09750 at 2113.360 kb on - strand, within PS417_09750 at 2113.533 kb on + strand, within PS417_09750 at 2113.533 kb on + strand, within PS417_09750 at 2113.534 kb on - strand, within PS417_09750 at 2113.570 kb on - strand at 2113.596 kb on + strand, within PS417_09750 at 2113.669 kb on - strand, within PS417_09750 at 2113.669 kb on - strand, within PS417_09750 at 2113.686 kb on + strand, within PS417_09750 at 2113.687 kb on - strand, within PS417_09750 at 2113.687 kb on - strand, within PS417_09750 at 2113.725 kb on + strand at 2113.752 kb on + strand, within PS417_09750 at 2113.752 kb on + strand, within PS417_09750 at 2113.753 kb on - strand, within PS417_09750 at 2113.753 kb on - strand, within PS417_09750 at 2113.884 kb on + strand, within PS417_09750 at 2113.885 kb on - strand, within PS417_09750 at 2113.942 kb on - strand, within PS417_09750 at 2114.011 kb on - strand, within PS417_09750 at 2114.049 kb on - strand at 2114.052 kb on + strand at 2114.052 kb on + strand at 2114.052 kb on + strand at 2114.052 kb on + strand at 2114.052 kb on + strand at 2114.053 kb on - strand at 2114.053 kb on - strand at 2114.100 kb on + strand at 2114.101 kb on - strand at 2114.199 kb on + strand at 2114.200 kb on - strand at 2114.232 kb on + strand at 2114.232 kb on + strand at 2114.371 kb on + strand at 2114.375 kb on + strand at 2114.522 kb on + strand at 2114.522 kb on + strand at 2114.523 kb on - strand at 2114.523 kb on - strand at 2114.523 kb on - strand at 2114.523 kb on - strand at 2114.618 kb on - strand at 2114.757 kb on - strand at 2114.773 kb on + strand at 2114.807 kb on + strand at 2114.840 kb on + strand, within PS417_09755 at 2114.840 kb on + strand, within PS417_09755 at 2114.841 kb on - strand, within PS417_09755 at 2114.897 kb on + strand, within PS417_09755 at 2114.898 kb on - strand, within PS417_09755 at 2115.130 kb on + strand, within PS417_09755 at 2115.182 kb on + strand, within PS417_09755 at 2115.251 kb on - strand, within PS417_09755 at 2115.251 kb on - strand, within PS417_09755 at 2115.253 kb on + strand, within PS417_09755 at 2115.254 kb on - strand, within PS417_09755 at 2115.258 kb on - strand at 2115.258 kb on - strand, within PS417_09755
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,110,928 - PS417_09745 0.10 +0.3 2,111,141 + PS417_09745 0.33 -0.4 2,111,430 + PS417_09745 0.63 -0.7 2,111,638 + PS417_09745 0.85 -1.8 2,111,639 - PS417_09745 0.85 -1.2 2,111,639 - PS417_09745 0.85 -0.0 2,111,867 + +4.0 2,111,868 - +0.1 2,111,868 - -0.1 2,111,903 + +1.1 2,112,391 + PS417_09750 0.21 +0.3 2,112,391 + PS417_09750 0.21 -3.1 2,112,392 - PS417_09750 0.21 +0.5 2,112,392 - PS417_09750 0.21 +2.4 2,112,449 - +0.3 2,112,903 + PS417_09750 0.43 -0.8 2,112,904 - PS417_09750 0.43 +1.2 2,112,907 - PS417_09750 0.43 -0.1 2,113,027 - PS417_09750 0.48 -0.4 2,113,071 + PS417_09750 0.50 -0.4 2,113,072 - PS417_09750 0.50 +0.4 2,113,075 - PS417_09750 0.50 +0.2 2,113,075 - PS417_09750 0.50 +2.5 2,113,097 + PS417_09750 0.51 -1.6 2,113,146 + PS417_09750 0.53 +2.9 2,113,146 + PS417_09750 0.53 -0.5 2,113,147 - PS417_09750 0.53 -2.2 2,113,147 - PS417_09750 0.53 -0.3 2,113,147 - -0.3 2,113,150 - PS417_09750 0.53 +0.2 2,113,320 + PS417_09750 0.60 -1.7 2,113,360 - PS417_09750 0.62 +0.8 2,113,360 - PS417_09750 0.62 +0.9 2,113,360 - PS417_09750 0.62 -2.2 2,113,360 - PS417_09750 0.62 +0.3 2,113,360 - PS417_09750 0.62 +0.4 2,113,533 + PS417_09750 0.69 -0.2 2,113,533 + PS417_09750 0.69 -0.1 2,113,534 - PS417_09750 0.69 +1.2 2,113,570 - +3.3 2,113,596 + PS417_09750 0.71 -0.3 2,113,669 - PS417_09750 0.74 -0.4 2,113,669 - PS417_09750 0.74 -0.6 2,113,686 + PS417_09750 0.75 +0.9 2,113,687 - PS417_09750 0.75 +0.6 2,113,687 - PS417_09750 0.75 +0.7 2,113,725 + -0.7 2,113,752 + PS417_09750 0.78 +1.1 2,113,752 + PS417_09750 0.78 +1.7 2,113,753 - PS417_09750 0.78 -0.1 2,113,753 - PS417_09750 0.78 +0.2 2,113,884 + PS417_09750 0.83 +0.1 2,113,885 - PS417_09750 0.83 -2.7 2,113,942 - PS417_09750 0.86 +0.8 2,114,011 - PS417_09750 0.89 -0.2 2,114,049 - -0.3 2,114,052 + +0.2 2,114,052 + +0.2 2,114,052 + +0.5 2,114,052 + -2.4 2,114,052 + +0.0 2,114,053 - +2.3 2,114,053 - +0.2 2,114,100 + -0.5 2,114,101 - -1.2 2,114,199 + +1.1 2,114,200 - +0.1 2,114,232 + +0.5 2,114,232 + +2.1 2,114,371 + -1.7 2,114,375 + -2.0 2,114,522 + +1.6 2,114,522 + -0.0 2,114,523 - -1.4 2,114,523 - +0.0 2,114,523 - +1.8 2,114,523 - +0.2 2,114,618 - -1.4 2,114,757 - -1.0 2,114,773 + +1.0 2,114,807 + -1.6 2,114,840 + PS417_09755 0.11 -0.6 2,114,840 + PS417_09755 0.11 -2.8 2,114,841 - PS417_09755 0.11 -1.1 2,114,897 + PS417_09755 0.21 -0.6 2,114,898 - PS417_09755 0.22 +0.8 2,115,130 + PS417_09755 0.65 -0.4 2,115,182 + PS417_09755 0.75 -0.0 2,115,251 - PS417_09755 0.88 -1.0 2,115,251 - PS417_09755 0.88 +0.9 2,115,253 + PS417_09755 0.88 -1.3 2,115,254 - PS417_09755 0.88 -0.0 2,115,258 - +2.3 2,115,258 - PS417_09755 0.89 -0.8
Or see this region's nucleotide sequence