Strain Fitness in Pseudomonas simiae WCS417 around PS417_09750

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_09745 and PS417_09750 are separated by 97 nucleotidesPS417_09750 and PS417_09755 are separated by 500 nucleotides PS417_09745: PS417_09745 - peptide ABC transporter substrate-binding protein, at 2,110,829 to 2,111,779 _09745 PS417_09750: PS417_09750 - amino acid ABC transporter substrate-binding protein, at 2,111,877 to 2,114,282 _09750 PS417_09755: PS417_09755 - hypothetical protein, at 2,114,783 to 2,115,316 _09755 Position (kb) 2111 2112 2113 2114 2115Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2110.928 kb on - strand, within PS417_09745at 2111.141 kb on + strand, within PS417_09745at 2111.430 kb on + strand, within PS417_09745at 2111.638 kb on + strand, within PS417_09745at 2111.639 kb on - strand, within PS417_09745at 2111.639 kb on - strand, within PS417_09745at 2111.867 kb on + strandat 2111.868 kb on - strandat 2111.868 kb on - strandat 2111.903 kb on + strandat 2112.391 kb on + strand, within PS417_09750at 2112.391 kb on + strand, within PS417_09750at 2112.392 kb on - strand, within PS417_09750at 2112.392 kb on - strand, within PS417_09750at 2112.449 kb on - strandat 2112.903 kb on + strand, within PS417_09750at 2112.904 kb on - strand, within PS417_09750at 2112.907 kb on - strand, within PS417_09750at 2113.027 kb on - strand, within PS417_09750at 2113.071 kb on + strand, within PS417_09750at 2113.072 kb on - strand, within PS417_09750at 2113.075 kb on - strand, within PS417_09750at 2113.075 kb on - strand, within PS417_09750at 2113.097 kb on + strand, within PS417_09750at 2113.146 kb on + strand, within PS417_09750at 2113.146 kb on + strand, within PS417_09750at 2113.147 kb on - strand, within PS417_09750at 2113.147 kb on - strand, within PS417_09750at 2113.147 kb on - strandat 2113.150 kb on - strand, within PS417_09750at 2113.320 kb on + strand, within PS417_09750at 2113.360 kb on - strand, within PS417_09750at 2113.360 kb on - strand, within PS417_09750at 2113.360 kb on - strand, within PS417_09750at 2113.360 kb on - strand, within PS417_09750at 2113.360 kb on - strand, within PS417_09750at 2113.533 kb on + strand, within PS417_09750at 2113.533 kb on + strand, within PS417_09750at 2113.534 kb on - strand, within PS417_09750at 2113.570 kb on - strandat 2113.596 kb on + strand, within PS417_09750at 2113.669 kb on - strand, within PS417_09750at 2113.669 kb on - strand, within PS417_09750at 2113.686 kb on + strand, within PS417_09750at 2113.687 kb on - strand, within PS417_09750at 2113.687 kb on - strand, within PS417_09750at 2113.725 kb on + strandat 2113.752 kb on + strand, within PS417_09750at 2113.752 kb on + strand, within PS417_09750at 2113.753 kb on - strand, within PS417_09750at 2113.753 kb on - strand, within PS417_09750at 2113.884 kb on + strand, within PS417_09750at 2113.885 kb on - strand, within PS417_09750at 2113.942 kb on - strand, within PS417_09750at 2114.011 kb on - strand, within PS417_09750at 2114.049 kb on - strandat 2114.052 kb on + strandat 2114.052 kb on + strandat 2114.052 kb on + strandat 2114.052 kb on + strandat 2114.052 kb on + strandat 2114.053 kb on - strandat 2114.053 kb on - strandat 2114.100 kb on + strandat 2114.101 kb on - strandat 2114.199 kb on + strandat 2114.200 kb on - strandat 2114.232 kb on + strandat 2114.232 kb on + strandat 2114.371 kb on + strandat 2114.375 kb on + strandat 2114.522 kb on + strandat 2114.522 kb on + strandat 2114.523 kb on - strandat 2114.523 kb on - strandat 2114.523 kb on - strandat 2114.523 kb on - strandat 2114.618 kb on - strandat 2114.757 kb on - strandat 2114.773 kb on + strandat 2114.807 kb on + strandat 2114.840 kb on + strand, within PS417_09755at 2114.840 kb on + strand, within PS417_09755at 2114.841 kb on - strand, within PS417_09755at 2114.897 kb on + strand, within PS417_09755at 2114.898 kb on - strand, within PS417_09755at 2115.130 kb on + strand, within PS417_09755at 2115.182 kb on + strand, within PS417_09755at 2115.251 kb on - strand, within PS417_09755at 2115.251 kb on - strand, within PS417_09755at 2115.253 kb on + strand, within PS417_09755at 2115.254 kb on - strand, within PS417_09755at 2115.258 kb on - strandat 2115.258 kb on - strand, within PS417_09755

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
remove
2,110,928 - PS417_09745 0.10 +0.3
2,111,141 + PS417_09745 0.33 -0.4
2,111,430 + PS417_09745 0.63 -0.7
2,111,638 + PS417_09745 0.85 -1.8
2,111,639 - PS417_09745 0.85 -1.2
2,111,639 - PS417_09745 0.85 -0.0
2,111,867 + +4.0
2,111,868 - +0.1
2,111,868 - -0.1
2,111,903 + +1.1
2,112,391 + PS417_09750 0.21 +0.3
2,112,391 + PS417_09750 0.21 -3.1
2,112,392 - PS417_09750 0.21 +0.5
2,112,392 - PS417_09750 0.21 +2.4
2,112,449 - +0.3
2,112,903 + PS417_09750 0.43 -0.8
2,112,904 - PS417_09750 0.43 +1.2
2,112,907 - PS417_09750 0.43 -0.1
2,113,027 - PS417_09750 0.48 -0.4
2,113,071 + PS417_09750 0.50 -0.4
2,113,072 - PS417_09750 0.50 +0.4
2,113,075 - PS417_09750 0.50 +0.2
2,113,075 - PS417_09750 0.50 +2.5
2,113,097 + PS417_09750 0.51 -1.6
2,113,146 + PS417_09750 0.53 +2.9
2,113,146 + PS417_09750 0.53 -0.5
2,113,147 - PS417_09750 0.53 -2.2
2,113,147 - PS417_09750 0.53 -0.3
2,113,147 - -0.3
2,113,150 - PS417_09750 0.53 +0.2
2,113,320 + PS417_09750 0.60 -1.7
2,113,360 - PS417_09750 0.62 +0.8
2,113,360 - PS417_09750 0.62 +0.9
2,113,360 - PS417_09750 0.62 -2.2
2,113,360 - PS417_09750 0.62 +0.3
2,113,360 - PS417_09750 0.62 +0.4
2,113,533 + PS417_09750 0.69 -0.2
2,113,533 + PS417_09750 0.69 -0.1
2,113,534 - PS417_09750 0.69 +1.2
2,113,570 - +3.3
2,113,596 + PS417_09750 0.71 -0.3
2,113,669 - PS417_09750 0.74 -0.4
2,113,669 - PS417_09750 0.74 -0.6
2,113,686 + PS417_09750 0.75 +0.9
2,113,687 - PS417_09750 0.75 +0.6
2,113,687 - PS417_09750 0.75 +0.7
2,113,725 + -0.7
2,113,752 + PS417_09750 0.78 +1.1
2,113,752 + PS417_09750 0.78 +1.7
2,113,753 - PS417_09750 0.78 -0.1
2,113,753 - PS417_09750 0.78 +0.2
2,113,884 + PS417_09750 0.83 +0.1
2,113,885 - PS417_09750 0.83 -2.7
2,113,942 - PS417_09750 0.86 +0.8
2,114,011 - PS417_09750 0.89 -0.2
2,114,049 - -0.3
2,114,052 + +0.2
2,114,052 + +0.2
2,114,052 + +0.5
2,114,052 + -2.4
2,114,052 + +0.0
2,114,053 - +2.3
2,114,053 - +0.2
2,114,100 + -0.5
2,114,101 - -1.2
2,114,199 + +1.1
2,114,200 - +0.1
2,114,232 + +0.5
2,114,232 + +2.1
2,114,371 + -1.7
2,114,375 + -2.0
2,114,522 + +1.6
2,114,522 + -0.0
2,114,523 - -1.4
2,114,523 - +0.0
2,114,523 - +1.8
2,114,523 - +0.2
2,114,618 - -1.4
2,114,757 - -1.0
2,114,773 + +1.0
2,114,807 + -1.6
2,114,840 + PS417_09755 0.11 -0.6
2,114,840 + PS417_09755 0.11 -2.8
2,114,841 - PS417_09755 0.11 -1.1
2,114,897 + PS417_09755 0.21 -0.6
2,114,898 - PS417_09755 0.22 +0.8
2,115,130 + PS417_09755 0.65 -0.4
2,115,182 + PS417_09755 0.75 -0.0
2,115,251 - PS417_09755 0.88 -1.0
2,115,251 - PS417_09755 0.88 +0.9
2,115,253 + PS417_09755 0.88 -1.3
2,115,254 - PS417_09755 0.88 -0.0
2,115,258 - +2.3
2,115,258 - PS417_09755 0.89 -0.8

Or see this region's nucleotide sequence