Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07090 and PS417_07095 are separated by 0 nucleotides PS417_07095 and PS417_07100 are separated by 36 nucleotides
PS417_07090: PS417_07090 - histidine kinase, at 1,568,949 to 1,570,334
_07090
PS417_07095: PS417_07095 - histidine kinase, at 1,570,335 to 1,571,156
_07095
PS417_07100: PS417_07100 - aminomethyltransferase, at 1,571,193 to 1,572,134
_07100
Position (kb)
1570
1571
1572 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1569.381 kb on - strand, within PS417_07090 at 1569.559 kb on + strand, within PS417_07090 at 1570.030 kb on + strand, within PS417_07090 at 1570.339 kb on + strand at 1570.340 kb on - strand at 1570.471 kb on + strand, within PS417_07095 at 1570.471 kb on + strand, within PS417_07095 at 1570.471 kb on + strand, within PS417_07095 at 1570.471 kb on + strand, within PS417_07095 at 1570.471 kb on + strand, within PS417_07095 at 1570.472 kb on - strand, within PS417_07095 at 1570.472 kb on - strand, within PS417_07095 at 1570.472 kb on - strand, within PS417_07095 at 1570.502 kb on - strand, within PS417_07095 at 1570.613 kb on + strand, within PS417_07095 at 1570.660 kb on + strand at 1570.769 kb on - strand, within PS417_07095 at 1570.804 kb on - strand, within PS417_07095 at 1570.889 kb on - strand, within PS417_07095 at 1570.889 kb on - strand, within PS417_07095 at 1570.889 kb on - strand, within PS417_07095 at 1570.889 kb on - strand, within PS417_07095 at 1571.121 kb on + strand at 1571.167 kb on + strand at 1571.168 kb on - strand at 1571.227 kb on + strand at 1571.227 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,569,381 - PS417_07090 0.31 -0.4 1,569,559 + PS417_07090 0.44 +0.6 1,570,030 + PS417_07090 0.78 -0.5 1,570,339 + -1.6 1,570,340 - +0.5 1,570,471 + PS417_07095 0.17 -0.3 1,570,471 + PS417_07095 0.17 -1.9 1,570,471 + PS417_07095 0.17 -2.9 1,570,471 + PS417_07095 0.17 -0.5 1,570,471 + PS417_07095 0.17 -0.8 1,570,472 - PS417_07095 0.17 -1.3 1,570,472 - PS417_07095 0.17 -0.6 1,570,472 - PS417_07095 0.17 -0.5 1,570,502 - PS417_07095 0.20 -3.3 1,570,613 + PS417_07095 0.34 -3.8 1,570,660 + -0.9 1,570,769 - PS417_07095 0.53 -1.8 1,570,804 - PS417_07095 0.57 +0.6 1,570,889 - PS417_07095 0.67 +1.5 1,570,889 - PS417_07095 0.67 -2.8 1,570,889 - PS417_07095 0.67 -2.4 1,570,889 - PS417_07095 0.67 -0.8 1,571,121 + -1.2 1,571,167 + -0.4 1,571,168 - -0.2 1,571,227 + -0.1 1,571,227 + -0.9
Or see this region's nucleotide sequence