Strain Fitness in Pseudomonas putida KT2440 around PP_2726

Experiment: Growth with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2724 and PP_2725 are separated by 56 nucleotidesPP_2725 and PP_2726 are separated by 89 nucleotidesPP_2726 and PP_2727 are separated by 95 nucleotidesPP_2727 and PP_2728 are separated by 78 nucleotides PP_2724: PP_2724 - conserved protein of unknown function, at 3,110,375 to 3,110,899 _2724 PP_2725: PP_2725 - Protease PfpI, at 3,110,956 to 3,111,498 _2725 PP_2726: PP_2726 - conserved membrane protein of unknown function, at 3,111,588 to 3,112,280 _2726 PP_2727: PP_2727 - putative C-factor, at 3,112,376 to 3,113,146 _2727 PP_2728: PP_2728 - conserved protein of unknown function, at 3,113,225 to 3,113,716 _2728 Position (kb) 3111 3112 3113Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3110.690 kb on - strand, within PP_2724at 3110.753 kb on + strand, within PP_2724at 3110.753 kb on + strand, within PP_2724at 3111.063 kb on + strand, within PP_2725at 3111.102 kb on - strand, within PP_2725at 3111.102 kb on - strand, within PP_2725at 3111.355 kb on + strand, within PP_2725at 3111.516 kb on - strandat 3111.526 kb on + strandat 3111.526 kb on + strandat 3111.574 kb on - strandat 3111.629 kb on + strandat 3111.629 kb on + strandat 3111.629 kb on + strandat 3111.630 kb on - strandat 3111.630 kb on - strandat 3111.790 kb on + strand, within PP_2726at 3111.797 kb on - strand, within PP_2726at 3111.871 kb on - strand, within PP_2726at 3111.922 kb on - strand, within PP_2726at 3111.928 kb on + strand, within PP_2726at 3111.929 kb on - strand, within PP_2726at 3112.065 kb on + strand, within PP_2726at 3112.232 kb on + strandat 3112.248 kb on + strandat 3112.248 kb on + strandat 3112.249 kb on - strandat 3112.312 kb on + strandat 3112.641 kb on + strand, within PP_2727at 3112.642 kb on - strand, within PP_2727at 3113.236 kb on + strandat 3113.236 kb on + strandat 3113.236 kb on + strandat 3113.238 kb on + strandat 3113.238 kb on + strandat 3113.239 kb on - strandat 3113.239 kb on - strandat 3113.248 kb on - strandat 3113.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth with Chloride 200 mM
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3,110,690 - PP_2724 0.60 +0.7
3,110,753 + PP_2724 0.72 +0.1
3,110,753 + PP_2724 0.72 +0.5
3,111,063 + PP_2725 0.20 -0.0
3,111,102 - PP_2725 0.27 -2.1
3,111,102 - PP_2725 0.27 -0.1
3,111,355 + PP_2725 0.73 -1.6
3,111,516 - -1.0
3,111,526 + -3.4
3,111,526 + -0.5
3,111,574 - -1.4
3,111,629 + +0.1
3,111,629 + +0.2
3,111,629 + -4.2
3,111,630 - +0.4
3,111,630 - -0.6
3,111,790 + PP_2726 0.29 +0.6
3,111,797 - PP_2726 0.30 -0.1
3,111,871 - PP_2726 0.41 +1.9
3,111,922 - PP_2726 0.48 +0.8
3,111,928 + PP_2726 0.49 -0.8
3,111,929 - PP_2726 0.49 +2.2
3,112,065 + PP_2726 0.69 +0.5
3,112,232 + +0.7
3,112,248 + -1.1
3,112,248 + +0.7
3,112,249 - +0.2
3,112,312 + -2.5
3,112,641 + PP_2727 0.34 +0.6
3,112,642 - PP_2727 0.35 -3.6
3,113,236 + -0.4
3,113,236 + +1.0
3,113,236 + -3.8
3,113,238 + +0.2
3,113,238 + -2.2
3,113,239 - +1.5
3,113,239 - +0.5
3,113,248 - -1.0
3,113,248 - -0.7

Or see this region's nucleotide sequence