Strain Fitness in Pseudomonas putida KT2440 around PP_0774

Experiment: Growth with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0772 and PP_0773 are separated by 118 nucleotidesPP_0773 and PP_0774 are separated by 79 nucleotidesPP_0774 and PP_0775 are separated by 31 nucleotidesPP_0775 and PP_0776 overlap by 2 nucleotidesPP_0776 and PP_0777 are separated by 145 nucleotides PP_0772: PP_0772 - Metallo-beta-lactamase family protein, at 890,074 to 890,718 _0772 PP_0773: PP_0773 - OmpA/MotB domain-containing protein, at 890,837 to 891,547 _0773 PP_0774: PP_0774 - Phosphate acetyltransferase, at 891,627 to 893,714 _0774 PP_0775: PP_0775 - conserved protein of unknown function, at 893,746 to 894,048 _0775 PP_0776: PP_0776 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 894,047 to 894,532 _0776 PP_0777: PP_0777 - Glutathione peroxidase, at 894,678 to 895,160 _0777 Position (kb) 891 892 893 894Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 890.777 kb on + strandat 890.777 kb on + strandat 890.777 kb on + strandat 890.777 kb on + strandat 890.777 kb on + strandat 890.777 kb on + strandat 890.777 kb on + strandat 890.777 kb on + strandat 890.778 kb on - strandat 890.778 kb on - strandat 890.778 kb on - strandat 890.778 kb on - strandat 890.778 kb on - strandat 890.816 kb on - strandat 890.903 kb on + strandat 890.904 kb on - strandat 890.957 kb on + strand, within PP_0773at 891.080 kb on + strand, within PP_0773at 891.224 kb on + strand, within PP_0773at 891.365 kb on + strand, within PP_0773at 891.365 kb on + strand, within PP_0773at 891.366 kb on - strand, within PP_0773at 891.366 kb on - strand, within PP_0773at 891.366 kb on - strand, within PP_0773at 891.366 kb on - strand, within PP_0773at 891.405 kb on + strand, within PP_0773at 891.406 kb on - strand, within PP_0773at 891.512 kb on + strandat 891.512 kb on + strandat 891.512 kb on + strandat 891.513 kb on - strandat 891.513 kb on - strandat 891.540 kb on - strandat 891.555 kb on + strandat 891.556 kb on - strandat 891.556 kb on - strandat 891.663 kb on + strandat 891.664 kb on - strandat 891.668 kb on + strandat 891.668 kb on + strandat 891.669 kb on - strandat 891.669 kb on - strandat 891.669 kb on - strandat 891.669 kb on - strandat 891.669 kb on - strandat 891.669 kb on - strandat 891.669 kb on - strandat 891.669 kb on - strandat 891.771 kb on + strandat 891.788 kb on + strandat 891.789 kb on - strandat 891.893 kb on - strand, within PP_0774at 891.997 kb on + strand, within PP_0774at 891.997 kb on + strand, within PP_0774at 891.997 kb on + strand, within PP_0774at 891.998 kb on - strand, within PP_0774at 892.366 kb on + strand, within PP_0774at 892.756 kb on + strand, within PP_0774at 892.756 kb on + strand, within PP_0774at 892.756 kb on + strand, within PP_0774at 892.757 kb on - strand, within PP_0774at 892.757 kb on - strand, within PP_0774at 892.757 kb on - strand, within PP_0774at 892.757 kb on - strand, within PP_0774at 892.957 kb on - strand, within PP_0774at 893.020 kb on + strand, within PP_0774at 893.192 kb on + strand, within PP_0774at 893.320 kb on - strand, within PP_0774at 893.320 kb on - strand, within PP_0774at 893.320 kb on - strand, within PP_0774at 893.438 kb on - strand, within PP_0774at 893.600 kb on + strandat 893.600 kb on + strandat 893.731 kb on - strandat 893.731 kb on - strandat 893.761 kb on - strandat 894.004 kb on + strand, within PP_0775at 894.004 kb on + strand, within PP_0775at 894.005 kb on - strand, within PP_0775at 894.019 kb on + strandat 894.083 kb on + strandat 894.083 kb on + strandat 894.084 kb on - strandat 894.084 kb on - strandat 894.084 kb on - strandat 894.085 kb on + strandat 894.086 kb on - strandat 894.166 kb on + strand, within PP_0776at 894.248 kb on + strand, within PP_0776at 894.257 kb on + strand, within PP_0776at 894.544 kb on - strandat 894.544 kb on - strandat 894.624 kb on + strandat 894.624 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth with Chloride 200 mM
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890,777 + +1.3
890,777 + +1.4
890,777 + -3.9
890,777 + -3.0
890,777 + +0.2
890,777 + -4.0
890,777 + -2.0
890,777 + -1.2
890,778 - +1.0
890,778 - +0.6
890,778 - -2.9
890,778 - +1.6
890,778 - -1.3
890,816 - +0.7
890,903 + +0.4
890,904 - -0.2
890,957 + PP_0773 0.17 +0.4
891,080 + PP_0773 0.34 -1.1
891,224 + PP_0773 0.54 -0.9
891,365 + PP_0773 0.74 -3.2
891,365 + PP_0773 0.74 +0.1
891,366 - PP_0773 0.74 +0.3
891,366 - PP_0773 0.74 -1.1
891,366 - PP_0773 0.74 +0.5
891,366 - PP_0773 0.74 +1.0
891,405 + PP_0773 0.80 +1.5
891,406 - PP_0773 0.80 +1.1
891,512 + -0.0
891,512 + +0.3
891,512 + -1.2
891,513 - +0.5
891,513 - -0.9
891,540 - -4.2
891,555 + -4.7
891,556 - +1.1
891,556 - -1.0
891,663 + +0.4
891,664 - +2.9
891,668 + -2.5
891,668 + +0.2
891,669 - -2.5
891,669 - -0.4
891,669 - -0.5
891,669 - +0.2
891,669 - +1.2
891,669 - -1.0
891,669 - +1.2
891,669 - -3.2
891,771 + +0.1
891,788 + +0.5
891,789 - -3.8
891,893 - PP_0774 0.13 -1.2
891,997 + PP_0774 0.18 +0.3
891,997 + PP_0774 0.18 -2.6
891,997 + PP_0774 0.18 -0.0
891,998 - PP_0774 0.18 -0.1
892,366 + PP_0774 0.35 +0.4
892,756 + PP_0774 0.54 -3.7
892,756 + PP_0774 0.54 -0.3
892,756 + PP_0774 0.54 -0.8
892,757 - PP_0774 0.54 -2.6
892,757 - PP_0774 0.54 -2.9
892,757 - PP_0774 0.54 -0.4
892,757 - PP_0774 0.54 -1.4
892,957 - PP_0774 0.64 +0.1
893,020 + PP_0774 0.67 -3.6
893,192 + PP_0774 0.75 +0.2
893,320 - PP_0774 0.81 -1.8
893,320 - PP_0774 0.81 -1.1
893,320 - PP_0774 0.81 -1.7
893,438 - PP_0774 0.87 +1.2
893,600 + -0.0
893,600 + +0.4
893,731 - -1.9
893,731 - +0.4
893,761 - -0.8
894,004 + PP_0775 0.85 -0.0
894,004 + PP_0775 0.85 +2.3
894,005 - PP_0775 0.85 +2.2
894,019 + -1.6
894,083 + +0.3
894,083 + +2.1
894,084 - -0.0
894,084 - -0.4
894,084 - +0.4
894,085 + -0.8
894,086 - -0.6
894,166 + PP_0776 0.24 -1.2
894,248 + PP_0776 0.41 -0.6
894,257 + PP_0776 0.43 -1.0
894,544 - +1.0
894,544 - -2.5
894,624 + -1.3
894,624 + +0.4

Or see this region's nucleotide sequence