Strain Fitness in Pseudomonas simiae WCS417 around PS417_04535

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04530 and PS417_04535 are separated by 85 nucleotidesPS417_04535 and PS417_04540 are separated by 258 nucleotides PS417_04530: PS417_04530 - glycerate dehydrogenase, at 1,000,547 to 1,001,512 _04530 PS417_04535: PS417_04535 - lysine transporter LysE, at 1,001,598 to 1,002,230 _04535 PS417_04540: PS417_04540 - long-chain fatty acid--CoA ligase, at 1,002,489 to 1,004,171 _04540 Position (kb) 1001 1002 1003Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2 3at 1000.715 kb on + strand, within PS417_04530at 1000.715 kb on + strand, within PS417_04530at 1000.715 kb on + strand, within PS417_04530at 1000.724 kb on + strand, within PS417_04530at 1001.140 kb on - strand, within PS417_04530at 1001.547 kb on - strandat 1001.547 kb on - strandat 1001.584 kb on + strandat 1001.584 kb on + strandat 1001.584 kb on + strandat 1001.585 kb on - strandat 1001.602 kb on - strandat 1001.638 kb on + strandat 1001.639 kb on - strandat 1001.850 kb on + strand, within PS417_04535at 1001.851 kb on - strand, within PS417_04535at 1001.851 kb on - strand, within PS417_04535at 1002.202 kb on + strandat 1002.228 kb on + strandat 1002.378 kb on + strandat 1002.378 kb on + strandat 1002.430 kb on + strandat 1002.431 kb on - strandat 1002.431 kb on - strandat 1002.475 kb on + strandat 1002.476 kb on - strandat 1002.476 kb on - strandat 1002.488 kb on + strandat 1002.488 kb on + strandat 1002.489 kb on - strandat 1002.619 kb on - strandat 1002.813 kb on + strand, within PS417_04540at 1002.814 kb on - strand, within PS417_04540at 1002.972 kb on + strand, within PS417_04540at 1002.973 kb on - strand, within PS417_04540at 1003.005 kb on + strand, within PS417_04540at 1003.006 kb on - strand, within PS417_04540at 1003.006 kb on - strand, within PS417_04540at 1003.050 kb on + strand, within PS417_04540at 1003.050 kb on + strand, within PS417_04540at 1003.051 kb on - strand, within PS417_04540at 1003.086 kb on + strand, within PS417_04540at 1003.086 kb on + strand, within PS417_04540at 1003.087 kb on - strand, within PS417_04540at 1003.087 kb on - strand, within PS417_04540at 1003.120 kb on + strand, within PS417_04540at 1003.120 kb on + strand, within PS417_04540at 1003.120 kb on + strand, within PS417_04540at 1003.121 kb on - strand, within PS417_04540at 1003.121 kb on - strand, within PS417_04540at 1003.121 kb on - strand, within PS417_04540at 1003.121 kb on - strand, within PS417_04540at 1003.121 kb on - strand, within PS417_04540at 1003.121 kb on - strand, within PS417_04540at 1003.182 kb on + strand, within PS417_04540at 1003.182 kb on + strand, within PS417_04540at 1003.182 kb on + strand, within PS417_04540at 1003.182 kb on + strand, within PS417_04540at 1003.182 kb on + strand, within PS417_04540at 1003.182 kb on + strand, within PS417_04540at 1003.183 kb on - strand, within PS417_04540at 1003.230 kb on + strand, within PS417_04540

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,000,715 + PS417_04530 0.17 -0.9
1,000,715 + PS417_04530 0.17 -0.9
1,000,715 + PS417_04530 0.17 +1.8
1,000,724 + PS417_04530 0.18 -0.5
1,001,140 - PS417_04530 0.61 -1.3
1,001,547 - +0.9
1,001,547 - -1.0
1,001,584 + -0.8
1,001,584 + -0.4
1,001,584 + -1.6
1,001,585 - +0.5
1,001,602 - -2.2
1,001,638 + -0.8
1,001,639 - +0.1
1,001,850 + PS417_04535 0.40 +0.9
1,001,851 - PS417_04535 0.40 +2.8
1,001,851 - PS417_04535 0.40 +0.7
1,002,202 + +0.6
1,002,228 + -0.6
1,002,378 + -0.2
1,002,378 + -0.8
1,002,430 + +2.8
1,002,431 - -0.6
1,002,431 - +1.8
1,002,475 + -7.4
1,002,476 - +0.0
1,002,476 - +0.9
1,002,488 + +3.3
1,002,488 + +0.4
1,002,489 - +1.5
1,002,619 - -0.7
1,002,813 + PS417_04540 0.19 -1.3
1,002,814 - PS417_04540 0.19 -1.7
1,002,972 + PS417_04540 0.29 +0.1
1,002,973 - PS417_04540 0.29 -2.0
1,003,005 + PS417_04540 0.31 +2.2
1,003,006 - PS417_04540 0.31 +1.9
1,003,006 - PS417_04540 0.31 +0.0
1,003,050 + PS417_04540 0.33 +2.8
1,003,050 + PS417_04540 0.33 -2.5
1,003,051 - PS417_04540 0.33 -0.2
1,003,086 + PS417_04540 0.35 +0.5
1,003,086 + PS417_04540 0.35 -2.8
1,003,087 - PS417_04540 0.36 +1.1
1,003,087 - PS417_04540 0.36 +2.0
1,003,120 + PS417_04540 0.37 +0.2
1,003,120 + PS417_04540 0.37 +0.8
1,003,120 + PS417_04540 0.37 -2.8
1,003,121 - PS417_04540 0.38 +0.3
1,003,121 - PS417_04540 0.38 -1.7
1,003,121 - PS417_04540 0.38 -2.0
1,003,121 - PS417_04540 0.38 -1.9
1,003,121 - PS417_04540 0.38 +0.3
1,003,121 - PS417_04540 0.38 +1.2
1,003,182 + PS417_04540 0.41 +0.2
1,003,182 + PS417_04540 0.41 -1.4
1,003,182 + PS417_04540 0.41 +1.4
1,003,182 + PS417_04540 0.41 -1.7
1,003,182 + PS417_04540 0.41 -0.2
1,003,182 + PS417_04540 0.41 -0.4
1,003,183 - PS417_04540 0.41 -1.1
1,003,230 + PS417_04540 0.44 +0.4

Or see this region's nucleotide sequence