Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04530 and PS417_04535 are separated by 85 nucleotides PS417_04535 and PS417_04540 are separated by 258 nucleotides
PS417_04530: PS417_04530 - glycerate dehydrogenase, at 1,000,547 to 1,001,512
_04530
PS417_04535: PS417_04535 - lysine transporter LysE, at 1,001,598 to 1,002,230
_04535
PS417_04540: PS417_04540 - long-chain fatty acid--CoA ligase, at 1,002,489 to 1,004,171
_04540
Position (kb)
1001
1002
1003 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 1000.715 kb on + strand, within PS417_04530 at 1000.715 kb on + strand, within PS417_04530 at 1000.715 kb on + strand, within PS417_04530 at 1000.724 kb on + strand, within PS417_04530 at 1001.140 kb on - strand, within PS417_04530 at 1001.547 kb on - strand at 1001.547 kb on - strand at 1001.584 kb on + strand at 1001.584 kb on + strand at 1001.584 kb on + strand at 1001.585 kb on - strand at 1001.602 kb on - strand at 1001.638 kb on + strand at 1001.639 kb on - strand at 1001.850 kb on + strand, within PS417_04535 at 1001.851 kb on - strand, within PS417_04535 at 1001.851 kb on - strand, within PS417_04535 at 1002.202 kb on + strand at 1002.228 kb on + strand at 1002.378 kb on + strand at 1002.378 kb on + strand at 1002.430 kb on + strand at 1002.431 kb on - strand at 1002.431 kb on - strand at 1002.475 kb on + strand at 1002.476 kb on - strand at 1002.476 kb on - strand at 1002.488 kb on + strand at 1002.488 kb on + strand at 1002.489 kb on - strand at 1002.619 kb on - strand at 1002.813 kb on + strand, within PS417_04540 at 1002.814 kb on - strand, within PS417_04540 at 1002.972 kb on + strand, within PS417_04540 at 1002.973 kb on - strand, within PS417_04540 at 1003.005 kb on + strand, within PS417_04540 at 1003.006 kb on - strand, within PS417_04540 at 1003.006 kb on - strand, within PS417_04540 at 1003.050 kb on + strand, within PS417_04540 at 1003.050 kb on + strand, within PS417_04540 at 1003.051 kb on - strand, within PS417_04540 at 1003.086 kb on + strand, within PS417_04540 at 1003.086 kb on + strand, within PS417_04540 at 1003.087 kb on - strand, within PS417_04540 at 1003.087 kb on - strand, within PS417_04540 at 1003.120 kb on + strand, within PS417_04540 at 1003.120 kb on + strand, within PS417_04540 at 1003.120 kb on + strand, within PS417_04540 at 1003.121 kb on - strand, within PS417_04540 at 1003.121 kb on - strand, within PS417_04540 at 1003.121 kb on - strand, within PS417_04540 at 1003.121 kb on - strand, within PS417_04540 at 1003.121 kb on - strand, within PS417_04540 at 1003.121 kb on - strand, within PS417_04540 at 1003.182 kb on + strand, within PS417_04540 at 1003.182 kb on + strand, within PS417_04540 at 1003.182 kb on + strand, within PS417_04540 at 1003.182 kb on + strand, within PS417_04540 at 1003.182 kb on + strand, within PS417_04540 at 1003.182 kb on + strand, within PS417_04540 at 1003.183 kb on - strand, within PS417_04540 at 1003.230 kb on + strand, within PS417_04540
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,000,715 + PS417_04530 0.17 -0.9 1,000,715 + PS417_04530 0.17 -0.9 1,000,715 + PS417_04530 0.17 +1.8 1,000,724 + PS417_04530 0.18 -0.5 1,001,140 - PS417_04530 0.61 -1.3 1,001,547 - +0.9 1,001,547 - -1.0 1,001,584 + -0.8 1,001,584 + -0.4 1,001,584 + -1.6 1,001,585 - +0.5 1,001,602 - -2.2 1,001,638 + -0.8 1,001,639 - +0.1 1,001,850 + PS417_04535 0.40 +0.9 1,001,851 - PS417_04535 0.40 +2.8 1,001,851 - PS417_04535 0.40 +0.7 1,002,202 + +0.6 1,002,228 + -0.6 1,002,378 + -0.2 1,002,378 + -0.8 1,002,430 + +2.8 1,002,431 - -0.6 1,002,431 - +1.8 1,002,475 + -7.4 1,002,476 - +0.0 1,002,476 - +0.9 1,002,488 + +3.3 1,002,488 + +0.4 1,002,489 - +1.5 1,002,619 - -0.7 1,002,813 + PS417_04540 0.19 -1.3 1,002,814 - PS417_04540 0.19 -1.7 1,002,972 + PS417_04540 0.29 +0.1 1,002,973 - PS417_04540 0.29 -2.0 1,003,005 + PS417_04540 0.31 +2.2 1,003,006 - PS417_04540 0.31 +1.9 1,003,006 - PS417_04540 0.31 +0.0 1,003,050 + PS417_04540 0.33 +2.8 1,003,050 + PS417_04540 0.33 -2.5 1,003,051 - PS417_04540 0.33 -0.2 1,003,086 + PS417_04540 0.35 +0.5 1,003,086 + PS417_04540 0.35 -2.8 1,003,087 - PS417_04540 0.36 +1.1 1,003,087 - PS417_04540 0.36 +2.0 1,003,120 + PS417_04540 0.37 +0.2 1,003,120 + PS417_04540 0.37 +0.8 1,003,120 + PS417_04540 0.37 -2.8 1,003,121 - PS417_04540 0.38 +0.3 1,003,121 - PS417_04540 0.38 -1.7 1,003,121 - PS417_04540 0.38 -2.0 1,003,121 - PS417_04540 0.38 -1.9 1,003,121 - PS417_04540 0.38 +0.3 1,003,121 - PS417_04540 0.38 +1.2 1,003,182 + PS417_04540 0.41 +0.2 1,003,182 + PS417_04540 0.41 -1.4 1,003,182 + PS417_04540 0.41 +1.4 1,003,182 + PS417_04540 0.41 -1.7 1,003,182 + PS417_04540 0.41 -0.2 1,003,182 + PS417_04540 0.41 -0.4 1,003,183 - PS417_04540 0.41 -1.1 1,003,230 + PS417_04540 0.44 +0.4
Or see this region's nucleotide sequence