Strain Fitness in Pseudomonas simiae WCS417 around PS417_27880

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27875 and PS417_27880 are separated by 117 nucleotidesPS417_27880 and PS417_27885 are separated by 124 nucleotides PS417_27875: PS417_27875 - histidine kinase, at 6,009,071 to 6,010,471 _27875 PS417_27880: PS417_27880 - helicase, at 6,010,589 to 6,010,963 _27880 PS417_27885: PS417_27885 - hypothetical protein, at 6,011,088 to 6,012,008 _27885 Position (kb) 6010 6011Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 6009.791 kb on + strand, within PS417_27875at 6009.791 kb on + strand, within PS417_27875at 6010.025 kb on + strand, within PS417_27875at 6010.025 kb on + strand, within PS417_27875at 6010.026 kb on - strand, within PS417_27875at 6010.221 kb on + strand, within PS417_27875at 6010.256 kb on + strand, within PS417_27875at 6010.256 kb on + strand, within PS417_27875at 6010.256 kb on + strandat 6010.257 kb on - strand, within PS417_27875at 6010.257 kb on - strand, within PS417_27875at 6010.257 kb on - strand, within PS417_27875at 6010.257 kb on - strand, within PS417_27875at 6010.412 kb on - strandat 6010.581 kb on + strandat 6010.582 kb on - strandat 6010.586 kb on + strandat 6010.587 kb on - strandat 6010.587 kb on - strandat 6010.590 kb on + strandat 6010.590 kb on + strandat 6010.591 kb on - strandat 6010.614 kb on + strandat 6010.984 kb on + strandat 6011.074 kb on + strandat 6011.074 kb on + strandat 6011.341 kb on - strand, within PS417_27885at 6011.383 kb on + strand, within PS417_27885at 6011.395 kb on + strandat 6011.395 kb on + strand, within PS417_27885at 6011.395 kb on + strand, within PS417_27885at 6011.630 kb on - strand, within PS417_27885at 6011.680 kb on + strand, within PS417_27885at 6011.681 kb on - strand, within PS417_27885at 6011.878 kb on + strand, within PS417_27885at 6011.881 kb on + strand, within PS417_27885at 6011.882 kb on - strand, within PS417_27885

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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6,009,791 + PS417_27875 0.51 -3.0
6,009,791 + PS417_27875 0.51 -1.0
6,010,025 + PS417_27875 0.68 -1.5
6,010,025 + PS417_27875 0.68 -3.7
6,010,026 - PS417_27875 0.68 +1.4
6,010,221 + PS417_27875 0.82 -2.2
6,010,256 + PS417_27875 0.85 -3.6
6,010,256 + PS417_27875 0.85 -1.5
6,010,256 + +0.5
6,010,257 - PS417_27875 0.85 -1.4
6,010,257 - PS417_27875 0.85 -0.4
6,010,257 - PS417_27875 0.85 +0.5
6,010,257 - PS417_27875 0.85 -0.4
6,010,412 - -1.6
6,010,581 + +0.2
6,010,582 - -0.3
6,010,586 + -1.6
6,010,587 - +0.0
6,010,587 - -2.2
6,010,590 + -0.3
6,010,590 + -0.3
6,010,591 - -0.0
6,010,614 + -0.8
6,010,984 + +0.3
6,011,074 + -0.6
6,011,074 + +1.3
6,011,341 - PS417_27885 0.27 +5.7
6,011,383 + PS417_27885 0.32 -3.5
6,011,395 + +0.7
6,011,395 + PS417_27885 0.33 -3.2
6,011,395 + PS417_27885 0.33 +0.7
6,011,630 - PS417_27885 0.59 +1.1
6,011,680 + PS417_27885 0.64 -1.0
6,011,681 - PS417_27885 0.64 +0.8
6,011,878 + PS417_27885 0.86 -1.7
6,011,881 + PS417_27885 0.86 -0.5
6,011,882 - PS417_27885 0.86 +0.4

Or see this region's nucleotide sequence