Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25165 and PS417_25170 are separated by 280 nucleotides PS417_25170 and PS417_25175 are separated by 144 nucleotides
PS417_25165: PS417_25165 - chitin-binding protein, at 5,454,346 to 5,454,981
_25165
PS417_25170: PS417_25170 - FAD-binding protein, at 5,455,262 to 5,456,950
_25170
PS417_25175: PS417_25175 - hypothetical protein, at 5,457,095 to 5,457,595
_25175
Position (kb) 5455
5456
5457 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5454.331 kb on + strand at 5454.525 kb on - strand at 5454.615 kb on + strand, within PS417_25165 at 5454.771 kb on - strand, within PS417_25165 at 5454.771 kb on - strand, within PS417_25165 at 5454.771 kb on - strand, within PS417_25165 at 5454.771 kb on - strand, within PS417_25165 at 5454.801 kb on + strand, within PS417_25165 at 5454.975 kb on + strand at 5454.976 kb on - strand at 5455.022 kb on + strand at 5455.048 kb on + strand at 5455.049 kb on - strand at 5455.086 kb on + strand at 5455.087 kb on - strand at 5455.087 kb on - strand at 5455.097 kb on + strand at 5455.100 kb on - strand at 5455.148 kb on + strand at 5455.392 kb on + strand at 5455.392 kb on + strand at 5455.396 kb on + strand at 5455.397 kb on - strand at 5455.397 kb on - strand at 5455.397 kb on - strand at 5455.481 kb on + strand, within PS417_25170 at 5455.482 kb on - strand, within PS417_25170 at 5455.622 kb on - strand, within PS417_25170 at 5455.625 kb on + strand, within PS417_25170 at 5455.661 kb on + strand, within PS417_25170 at 5455.673 kb on + strand, within PS417_25170 at 5455.695 kb on + strand, within PS417_25170 at 5455.846 kb on - strand, within PS417_25170 at 5456.058 kb on - strand, within PS417_25170 at 5456.060 kb on + strand, within PS417_25170 at 5456.102 kb on - strand, within PS417_25170 at 5456.189 kb on + strand, within PS417_25170 at 5456.190 kb on - strand, within PS417_25170 at 5456.243 kb on - strand, within PS417_25170 at 5456.643 kb on - strand, within PS417_25170 at 5456.726 kb on - strand, within PS417_25170 at 5456.765 kb on - strand, within PS417_25170 at 5456.791 kb on + strand at 5456.796 kb on + strand at 5456.997 kb on - strand at 5457.070 kb on + strand at 5457.071 kb on - strand at 5457.214 kb on - strand, within PS417_25175 at 5457.300 kb on - strand, within PS417_25175 at 5457.332 kb on + strand, within PS417_25175 at 5457.338 kb on - strand, within PS417_25175 at 5457.342 kb on - strand, within PS417_25175 at 5457.407 kb on - strand, within PS417_25175 at 5457.514 kb on + strand, within PS417_25175 at 5457.671 kb on + strand at 5457.919 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,454,331 + -2.2 5,454,525 - +0.9 5,454,615 + PS417_25165 0.42 +0.3 5,454,771 - PS417_25165 0.67 -0.6 5,454,771 - PS417_25165 0.67 +0.1 5,454,771 - PS417_25165 0.67 +1.1 5,454,771 - PS417_25165 0.67 +1.2 5,454,801 + PS417_25165 0.72 -0.3 5,454,975 + +1.7 5,454,976 - +0.6 5,455,022 + -0.4 5,455,048 + -0.4 5,455,049 - -0.6 5,455,086 + +2.7 5,455,087 - -0.2 5,455,087 - -0.3 5,455,097 + +1.9 5,455,100 - -0.5 5,455,148 + -1.7 5,455,392 + +0.4 5,455,392 + +1.2 5,455,396 + +0.1 5,455,397 - +1.4 5,455,397 - +0.5 5,455,397 - +0.7 5,455,481 + PS417_25170 0.13 +0.7 5,455,482 - PS417_25170 0.13 -1.7 5,455,622 - PS417_25170 0.21 -2.3 5,455,625 + PS417_25170 0.21 +0.6 5,455,661 + PS417_25170 0.24 -0.3 5,455,673 + PS417_25170 0.24 +0.4 5,455,695 + PS417_25170 0.26 +1.3 5,455,846 - PS417_25170 0.35 +2.5 5,456,058 - PS417_25170 0.47 +0.7 5,456,060 + PS417_25170 0.47 +0.9 5,456,102 - PS417_25170 0.50 +3.1 5,456,189 + PS417_25170 0.55 +1.8 5,456,190 - PS417_25170 0.55 +0.4 5,456,243 - PS417_25170 0.58 -0.6 5,456,643 - PS417_25170 0.82 +1.4 5,456,726 - PS417_25170 0.87 +0.0 5,456,765 - PS417_25170 0.89 +2.4 5,456,791 + -0.6 5,456,796 + +2.3 5,456,997 - +0.5 5,457,070 + +1.5 5,457,071 - -2.6 5,457,214 - PS417_25175 0.24 -0.8 5,457,300 - PS417_25175 0.41 +0.6 5,457,332 + PS417_25175 0.47 -3.4 5,457,338 - PS417_25175 0.49 -1.2 5,457,342 - PS417_25175 0.49 -0.6 5,457,407 - PS417_25175 0.62 -1.6 5,457,514 + PS417_25175 0.84 +0.3 5,457,671 + -1.0 5,457,919 - -2.0
Or see this region's nucleotide sequence