Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24540 and PS417_24545 are separated by 18 nucleotides PS417_24545 and PS417_24550 are separated by 413 nucleotides
PS417_24540: PS417_24540 - endonuclease, at 5,323,791 to 5,324,879
_24540
PS417_24545: PS417_24545 - isomerase, at 5,324,898 to 5,325,650
_24545
PS417_24550: PS417_24550 - ATP-dependent helicase, at 5,326,064 to 5,328,574
_24550
Position (kb) 5324
5325
5326 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5323.977 kb on + strand, within PS417_24540 at 5323.977 kb on + strand, within PS417_24540 at 5323.978 kb on - strand, within PS417_24540 at 5324.008 kb on - strand, within PS417_24540 at 5324.397 kb on + strand, within PS417_24540 at 5324.513 kb on + strand, within PS417_24540 at 5324.613 kb on + strand, within PS417_24540 at 5324.769 kb on + strand, within PS417_24540 at 5324.770 kb on - strand, within PS417_24540 at 5324.816 kb on + strand at 5324.817 kb on - strand at 5324.817 kb on - strand at 5324.821 kb on + strand at 5324.822 kb on - strand at 5324.822 kb on - strand at 5324.825 kb on + strand at 5324.877 kb on + strand at 5324.877 kb on + strand at 5324.878 kb on - strand at 5324.900 kb on - strand at 5325.069 kb on + strand, within PS417_24545 at 5325.069 kb on + strand, within PS417_24545 at 5325.069 kb on + strand, within PS417_24545 at 5325.069 kb on + strand, within PS417_24545 at 5325.070 kb on - strand, within PS417_24545 at 5325.070 kb on - strand, within PS417_24545 at 5325.070 kb on - strand, within PS417_24545 at 5325.088 kb on + strand, within PS417_24545 at 5325.139 kb on + strand, within PS417_24545 at 5325.211 kb on + strand, within PS417_24545 at 5325.211 kb on + strand, within PS417_24545 at 5325.211 kb on + strand, within PS417_24545 at 5325.211 kb on + strand, within PS417_24545 at 5325.211 kb on + strand, within PS417_24545 at 5325.211 kb on + strand, within PS417_24545 at 5325.211 kb on + strand, within PS417_24545 at 5325.212 kb on - strand, within PS417_24545 at 5325.212 kb on - strand, within PS417_24545 at 5325.212 kb on - strand, within PS417_24545 at 5325.212 kb on - strand, within PS417_24545 at 5325.212 kb on - strand, within PS417_24545 at 5325.212 kb on - strand, within PS417_24545 at 5325.212 kb on - strand, within PS417_24545 at 5325.212 kb on - strand, within PS417_24545 at 5325.215 kb on - strand, within PS417_24545 at 5325.248 kb on + strand, within PS417_24545 at 5325.278 kb on - strand, within PS417_24545 at 5325.299 kb on + strand, within PS417_24545 at 5325.299 kb on + strand, within PS417_24545 at 5325.303 kb on + strand, within PS417_24545 at 5325.303 kb on + strand, within PS417_24545 at 5325.303 kb on + strand, within PS417_24545 at 5325.304 kb on - strand, within PS417_24545 at 5325.304 kb on - strand, within PS417_24545 at 5325.304 kb on - strand, within PS417_24545 at 5325.304 kb on - strand, within PS417_24545 at 5325.304 kb on - strand, within PS417_24545 at 5325.304 kb on - strand, within PS417_24545 at 5325.304 kb on - strand, within PS417_24545 at 5325.304 kb on - strand, within PS417_24545 at 5325.496 kb on + strand, within PS417_24545 at 5325.497 kb on - strand, within PS417_24545 at 5325.497 kb on - strand, within PS417_24545 at 5325.497 kb on - strand, within PS417_24545 at 5325.655 kb on - strand at 5325.658 kb on + strand at 5325.659 kb on - strand at 5325.673 kb on + strand at 5325.722 kb on - strand at 5325.744 kb on - strand at 5325.744 kb on - strand at 5325.744 kb on - strand at 5325.764 kb on - strand at 5325.764 kb on - strand at 5325.883 kb on + strand at 5325.884 kb on - strand at 5326.059 kb on + strand at 5326.060 kb on - strand at 5326.060 kb on - strand at 5326.060 kb on - strand at 5326.171 kb on - strand at 5326.171 kb on - strand at 5326.175 kb on - strand at 5326.175 kb on - strand at 5326.447 kb on + strand, within PS417_24550
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,323,977 + PS417_24540 0.17 +0.0 5,323,977 + PS417_24540 0.17 +0.4 5,323,978 - PS417_24540 0.17 +0.3 5,324,008 - PS417_24540 0.20 +0.5 5,324,397 + PS417_24540 0.56 -1.9 5,324,513 + PS417_24540 0.66 +0.8 5,324,613 + PS417_24540 0.75 -0.1 5,324,769 + PS417_24540 0.90 -0.5 5,324,770 - PS417_24540 0.90 -0.6 5,324,816 + +0.5 5,324,817 - +0.5 5,324,817 - +0.4 5,324,821 + -0.5 5,324,822 - -0.1 5,324,822 - -2.3 5,324,825 + +0.1 5,324,877 + +0.1 5,324,877 + -0.7 5,324,878 - -1.4 5,324,900 - +0.3 5,325,069 + PS417_24545 0.23 +0.2 5,325,069 + PS417_24545 0.23 -3.6 5,325,069 + PS417_24545 0.23 +1.2 5,325,069 + PS417_24545 0.23 -1.1 5,325,070 - PS417_24545 0.23 +0.1 5,325,070 - PS417_24545 0.23 +0.9 5,325,070 - PS417_24545 0.23 -0.0 5,325,088 + PS417_24545 0.25 +0.7 5,325,139 + PS417_24545 0.32 -0.6 5,325,211 + PS417_24545 0.42 -0.8 5,325,211 + PS417_24545 0.42 -1.4 5,325,211 + PS417_24545 0.42 +0.9 5,325,211 + PS417_24545 0.42 +0.0 5,325,211 + PS417_24545 0.42 -1.3 5,325,211 + PS417_24545 0.42 +1.8 5,325,211 + PS417_24545 0.42 -0.8 5,325,212 - PS417_24545 0.42 +0.0 5,325,212 - PS417_24545 0.42 +1.6 5,325,212 - PS417_24545 0.42 -2.6 5,325,212 - PS417_24545 0.42 +0.5 5,325,212 - PS417_24545 0.42 -0.9 5,325,212 - PS417_24545 0.42 -4.7 5,325,212 - PS417_24545 0.42 -2.1 5,325,212 - PS417_24545 0.42 -0.2 5,325,215 - PS417_24545 0.42 -0.1 5,325,248 + PS417_24545 0.46 +0.2 5,325,278 - PS417_24545 0.50 -1.5 5,325,299 + PS417_24545 0.53 -2.9 5,325,299 + PS417_24545 0.53 +2.3 5,325,303 + PS417_24545 0.54 -0.3 5,325,303 + PS417_24545 0.54 -0.1 5,325,303 + PS417_24545 0.54 -1.8 5,325,304 - PS417_24545 0.54 -1.5 5,325,304 - PS417_24545 0.54 -0.2 5,325,304 - PS417_24545 0.54 +0.1 5,325,304 - PS417_24545 0.54 -0.9 5,325,304 - PS417_24545 0.54 -2.6 5,325,304 - PS417_24545 0.54 -2.3 5,325,304 - PS417_24545 0.54 -2.4 5,325,304 - PS417_24545 0.54 +1.9 5,325,496 + PS417_24545 0.79 -0.4 5,325,497 - PS417_24545 0.80 +0.3 5,325,497 - PS417_24545 0.80 +0.9 5,325,497 - PS417_24545 0.80 -0.9 5,325,655 - -0.6 5,325,658 + +0.3 5,325,659 - -0.0 5,325,673 + +0.4 5,325,722 - -2.4 5,325,744 - -0.5 5,325,744 - +1.6 5,325,744 - +0.4 5,325,764 - -0.9 5,325,764 - -1.6 5,325,883 + -2.7 5,325,884 - -0.1 5,326,059 + +0.7 5,326,060 - +0.6 5,326,060 - -0.5 5,326,060 - -2.8 5,326,171 - -2.9 5,326,171 - -1.9 5,326,175 - -0.6 5,326,175 - -1.0 5,326,447 + PS417_24550 0.15 -0.2
Or see this region's nucleotide sequence