Strain Fitness in Pseudomonas simiae WCS417 around PS417_23225

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_23220 and PS417_23225 are separated by 58 nucleotidesPS417_23225 and PS417_23230 are separated by 123 nucleotides PS417_23220: PS417_23220 - inositol monophosphatase, at 5,029,560 to 5,030,375 _23220 PS417_23225: PS417_23225 - hypothetical protein, at 5,030,434 to 5,030,976 _23225 PS417_23230: PS417_23230 - preprotein translocase subunit SecF, at 5,031,100 to 5,032,014 _23230 Position (kb) 5030 5031Strain fitness (log2 ratio) -3 -2 -1 0 1at 5029.472 kb on - strandat 5029.486 kb on - strandat 5030.541 kb on - strand, within PS417_23225at 5030.612 kb on + strand, within PS417_23225at 5030.613 kb on - strand, within PS417_23225at 5030.613 kb on - strand, within PS417_23225at 5030.616 kb on + strand, within PS417_23225at 5030.617 kb on - strand, within PS417_23225at 5030.697 kb on + strand, within PS417_23225at 5030.749 kb on + strand, within PS417_23225at 5030.750 kb on - strand, within PS417_23225at 5030.836 kb on + strand, within PS417_23225at 5030.836 kb on + strand, within PS417_23225at 5030.877 kb on - strand, within PS417_23225at 5030.903 kb on + strand, within PS417_23225at 5030.903 kb on + strand, within PS417_23225at 5030.903 kb on + strand, within PS417_23225at 5030.904 kb on - strand, within PS417_23225at 5030.904 kb on - strand, within PS417_23225at 5030.904 kb on - strand, within PS417_23225at 5030.929 kb on + strandat 5030.930 kb on - strandat 5030.930 kb on - strandat 5031.144 kb on + strandat 5031.145 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
remove
5,029,472 - +1.3
5,029,486 - -1.7
5,030,541 - PS417_23225 0.20 -0.2
5,030,612 + PS417_23225 0.33 -0.5
5,030,613 - PS417_23225 0.33 -0.8
5,030,613 - PS417_23225 0.33 -0.6
5,030,616 + PS417_23225 0.34 -0.0
5,030,617 - PS417_23225 0.34 -3.2
5,030,697 + PS417_23225 0.48 -0.8
5,030,749 + PS417_23225 0.58 -2.8
5,030,750 - PS417_23225 0.58 -0.3
5,030,836 + PS417_23225 0.74 +0.3
5,030,836 + PS417_23225 0.74 -2.4
5,030,877 - PS417_23225 0.82 -0.4
5,030,903 + PS417_23225 0.86 +0.1
5,030,903 + PS417_23225 0.86 -2.0
5,030,903 + PS417_23225 0.86 -1.3
5,030,904 - PS417_23225 0.87 -0.2
5,030,904 - PS417_23225 0.87 +0.1
5,030,904 - PS417_23225 0.87 -1.0
5,030,929 + -2.3
5,030,930 - +0.5
5,030,930 - +0.3
5,031,144 + -0.7
5,031,145 - -0.1

Or see this region's nucleotide sequence