Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20460 and PS417_20465 overlap by 4 nucleotides PS417_20465 and PS417_20470 are separated by 268 nucleotides
PS417_20460: PS417_20460 - chromosome segregation protein SMC, at 4,443,110 to 4,445,275
_20460
PS417_20465: PS417_20465 - hypothetical protein, at 4,445,272 to 4,447,272
_20465
PS417_20470: PS417_20470 - hypothetical protein, at 4,447,541 to 4,448,365
_20470
Position (kb)
4445
4446
4447
4448 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 4444.335 kb on + strand, within PS417_20460 at 4444.335 kb on + strand, within PS417_20460 at 4444.335 kb on + strand, within PS417_20460 at 4444.335 kb on + strand, within PS417_20460 at 4444.335 kb on + strand, within PS417_20460 at 4444.335 kb on + strand, within PS417_20460 at 4444.336 kb on - strand, within PS417_20460 at 4444.336 kb on - strand, within PS417_20460 at 4444.336 kb on - strand, within PS417_20460 at 4444.336 kb on - strand, within PS417_20460 at 4444.339 kb on - strand, within PS417_20460 at 4444.361 kb on + strand, within PS417_20460 at 4444.404 kb on - strand, within PS417_20460 at 4444.501 kb on - strand, within PS417_20460 at 4444.649 kb on - strand, within PS417_20460 at 4444.842 kb on + strand, within PS417_20460 at 4444.843 kb on - strand at 4445.054 kb on - strand, within PS417_20460 at 4445.057 kb on + strand, within PS417_20460 at 4445.057 kb on + strand, within PS417_20460 at 4445.057 kb on + strand, within PS417_20460 at 4445.057 kb on + strand, within PS417_20460 at 4445.057 kb on + strand, within PS417_20460 at 4445.058 kb on - strand, within PS417_20460 at 4445.058 kb on - strand, within PS417_20460 at 4445.058 kb on - strand, within PS417_20460 at 4445.058 kb on - strand, within PS417_20460 at 4445.058 kb on - strand, within PS417_20460 at 4445.058 kb on - strand, within PS417_20460 at 4445.080 kb on - strand at 4445.105 kb on + strand at 4445.106 kb on - strand at 4445.132 kb on + strand at 4445.204 kb on + strand at 4445.204 kb on + strand at 4445.204 kb on + strand at 4445.204 kb on + strand at 4445.205 kb on - strand at 4445.205 kb on - strand at 4445.226 kb on + strand at 4445.337 kb on + strand at 4445.337 kb on + strand at 4445.337 kb on + strand at 4445.337 kb on + strand at 4445.338 kb on - strand at 4445.551 kb on - strand, within PS417_20465 at 4445.587 kb on + strand, within PS417_20465 at 4445.587 kb on + strand, within PS417_20465 at 4445.848 kb on - strand, within PS417_20465 at 4445.848 kb on - strand, within PS417_20465 at 4445.858 kb on - strand, within PS417_20465 at 4445.964 kb on - strand, within PS417_20465 at 4445.964 kb on - strand, within PS417_20465 at 4446.041 kb on - strand, within PS417_20465 at 4446.077 kb on + strand, within PS417_20465 at 4446.077 kb on + strand, within PS417_20465 at 4446.078 kb on - strand, within PS417_20465 at 4446.078 kb on - strand, within PS417_20465 at 4446.078 kb on - strand, within PS417_20465 at 4446.078 kb on - strand, within PS417_20465 at 4446.205 kb on - strand, within PS417_20465 at 4446.272 kb on + strand, within PS417_20465 at 4446.273 kb on - strand, within PS417_20465 at 4446.273 kb on - strand, within PS417_20465 at 4446.327 kb on + strand, within PS417_20465 at 4446.328 kb on - strand, within PS417_20465 at 4446.493 kb on + strand, within PS417_20465 at 4446.494 kb on - strand, within PS417_20465 at 4446.494 kb on - strand, within PS417_20465 at 4446.494 kb on - strand, within PS417_20465 at 4446.513 kb on - strand, within PS417_20465 at 4446.752 kb on + strand, within PS417_20465 at 4446.752 kb on + strand, within PS417_20465 at 4446.752 kb on + strand, within PS417_20465 at 4446.752 kb on + strand, within PS417_20465 at 4446.930 kb on + strand, within PS417_20465 at 4446.930 kb on + strand, within PS417_20465 at 4446.930 kb on + strand, within PS417_20465 at 4446.930 kb on + strand, within PS417_20465 at 4446.981 kb on + strand, within PS417_20465 at 4446.982 kb on - strand, within PS417_20465 at 4446.982 kb on - strand, within PS417_20465 at 4447.033 kb on + strand, within PS417_20465 at 4447.033 kb on + strand, within PS417_20465 at 4447.034 kb on - strand, within PS417_20465 at 4447.039 kb on + strand, within PS417_20465 at 4447.039 kb on + strand, within PS417_20465 at 4447.039 kb on + strand, within PS417_20465 at 4447.040 kb on - strand, within PS417_20465 at 4447.040 kb on - strand, within PS417_20465 at 4447.110 kb on + strand at 4447.141 kb on + strand at 4447.141 kb on + strand at 4447.141 kb on + strand at 4447.141 kb on + strand at 4447.141 kb on + strand at 4447.141 kb on + strand at 4447.141 kb on + strand at 4447.142 kb on - strand at 4447.142 kb on - strand at 4447.142 kb on - strand at 4447.142 kb on - strand at 4447.142 kb on - strand at 4447.142 kb on - strand at 4447.270 kb on + strand at 4447.317 kb on + strand at 4447.318 kb on - strand at 4447.318 kb on - strand at 4447.334 kb on + strand at 4447.334 kb on + strand at 4447.334 kb on + strand at 4447.334 kb on + strand at 4447.335 kb on - strand at 4447.335 kb on - strand at 4447.335 kb on - strand at 4447.381 kb on + strand at 4447.382 kb on - strand at 4447.416 kb on + strand at 4447.446 kb on - strand at 4447.508 kb on + strand at 4447.694 kb on + strand, within PS417_20470 at 4447.695 kb on - strand, within PS417_20470 at 4447.695 kb on - strand, within PS417_20470 at 4447.730 kb on - strand, within PS417_20470 at 4447.771 kb on + strand, within PS417_20470 at 4447.772 kb on - strand, within PS417_20470 at 4447.837 kb on + strand, within PS417_20470 at 4447.875 kb on + strand, within PS417_20470 at 4447.876 kb on - strand, within PS417_20470 at 4447.876 kb on - strand, within PS417_20470 at 4447.876 kb on - strand, within PS417_20470 at 4447.876 kb on - strand, within PS417_20470 at 4447.924 kb on - strand, within PS417_20470 at 4447.924 kb on - strand, within PS417_20470 at 4447.987 kb on + strand, within PS417_20470 at 4447.996 kb on + strand, within PS417_20470 at 4448.172 kb on + strand, within PS417_20470 at 4448.172 kb on + strand, within PS417_20470 at 4448.172 kb on + strand, within PS417_20470 at 4448.172 kb on + strand, within PS417_20470 at 4448.173 kb on - strand, within PS417_20470 at 4448.173 kb on - strand, within PS417_20470 at 4448.173 kb on - strand, within PS417_20470 at 4448.173 kb on - strand, within PS417_20470 at 4448.173 kb on - strand, within PS417_20470 at 4448.173 kb on - strand, within PS417_20470 at 4448.173 kb on - strand, within PS417_20470 at 4448.217 kb on + strand, within PS417_20470 at 4448.217 kb on + strand, within PS417_20470 at 4448.217 kb on + strand, within PS417_20470 at 4448.218 kb on - strand, within PS417_20470 at 4448.218 kb on - strand, within PS417_20470 at 4448.258 kb on + strand, within PS417_20470 at 4448.259 kb on - strand, within PS417_20470
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,444,335 + PS417_20460 0.57 -0.6 4,444,335 + PS417_20460 0.57 -1.0 4,444,335 + PS417_20460 0.57 +1.3 4,444,335 + PS417_20460 0.57 -0.2 4,444,335 + PS417_20460 0.57 +1.1 4,444,335 + PS417_20460 0.57 -1.5 4,444,336 - PS417_20460 0.57 -0.6 4,444,336 - PS417_20460 0.57 -1.1 4,444,336 - PS417_20460 0.57 -0.2 4,444,336 - PS417_20460 0.57 +3.5 4,444,339 - PS417_20460 0.57 -0.7 4,444,361 + PS417_20460 0.58 +0.2 4,444,404 - PS417_20460 0.60 +0.6 4,444,501 - PS417_20460 0.64 +0.1 4,444,649 - PS417_20460 0.71 -1.1 4,444,842 + PS417_20460 0.80 -3.3 4,444,843 - -0.2 4,445,054 - PS417_20460 0.90 -0.3 4,445,057 + PS417_20460 0.90 -0.3 4,445,057 + PS417_20460 0.90 +1.2 4,445,057 + PS417_20460 0.90 +0.1 4,445,057 + PS417_20460 0.90 +0.6 4,445,057 + PS417_20460 0.90 -1.1 4,445,058 - PS417_20460 0.90 -0.3 4,445,058 - PS417_20460 0.90 +2.9 4,445,058 - PS417_20460 0.90 +0.7 4,445,058 - PS417_20460 0.90 -2.8 4,445,058 - PS417_20460 0.90 +0.1 4,445,058 - PS417_20460 0.90 +0.1 4,445,080 - -0.6 4,445,105 + -2.6 4,445,106 - +0.9 4,445,132 + +1.4 4,445,204 + +0.8 4,445,204 + -0.4 4,445,204 + -0.2 4,445,204 + +1.8 4,445,205 - +1.2 4,445,205 - -0.2 4,445,226 + -1.4 4,445,337 + +0.4 4,445,337 + +0.0 4,445,337 + -0.2 4,445,337 + -0.6 4,445,338 - -0.6 4,445,551 - PS417_20465 0.14 -1.8 4,445,587 + PS417_20465 0.16 +2.2 4,445,587 + PS417_20465 0.16 -0.7 4,445,848 - PS417_20465 0.29 +0.1 4,445,848 - PS417_20465 0.29 -0.4 4,445,858 - PS417_20465 0.29 +1.0 4,445,964 - PS417_20465 0.35 +0.5 4,445,964 - PS417_20465 0.35 -1.8 4,446,041 - PS417_20465 0.38 -0.5 4,446,077 + PS417_20465 0.40 -0.4 4,446,077 + PS417_20465 0.40 +2.5 4,446,078 - PS417_20465 0.40 +1.3 4,446,078 - PS417_20465 0.40 +5.2 4,446,078 - PS417_20465 0.40 -1.6 4,446,078 - PS417_20465 0.40 +1.2 4,446,205 - PS417_20465 0.47 +1.4 4,446,272 + PS417_20465 0.50 -0.8 4,446,273 - PS417_20465 0.50 +0.0 4,446,273 - PS417_20465 0.50 -2.6 4,446,327 + PS417_20465 0.53 +1.8 4,446,328 - PS417_20465 0.53 -0.9 4,446,493 + PS417_20465 0.61 -1.9 4,446,494 - PS417_20465 0.61 +0.1 4,446,494 - PS417_20465 0.61 +0.5 4,446,494 - PS417_20465 0.61 +0.4 4,446,513 - PS417_20465 0.62 -1.2 4,446,752 + PS417_20465 0.74 +0.2 4,446,752 + PS417_20465 0.74 -0.3 4,446,752 + PS417_20465 0.74 +0.4 4,446,752 + PS417_20465 0.74 +1.8 4,446,930 + PS417_20465 0.83 +0.0 4,446,930 + PS417_20465 0.83 -0.5 4,446,930 + PS417_20465 0.83 +1.0 4,446,930 + PS417_20465 0.83 -1.0 4,446,981 + PS417_20465 0.85 +0.2 4,446,982 - PS417_20465 0.85 +0.5 4,446,982 - PS417_20465 0.85 +0.1 4,447,033 + PS417_20465 0.88 +0.0 4,447,033 + PS417_20465 0.88 -0.9 4,447,034 - PS417_20465 0.88 +1.5 4,447,039 + PS417_20465 0.88 +1.6 4,447,039 + PS417_20465 0.88 -0.6 4,447,039 + PS417_20465 0.88 -0.4 4,447,040 - PS417_20465 0.88 +1.4 4,447,040 - PS417_20465 0.88 -1.9 4,447,110 + -0.1 4,447,141 + +0.3 4,447,141 + +1.8 4,447,141 + -0.6 4,447,141 + -0.4 4,447,141 + +0.5 4,447,141 + -0.9 4,447,141 + +0.6 4,447,142 - -1.2 4,447,142 - -1.1 4,447,142 - -0.8 4,447,142 - +0.2 4,447,142 - +0.8 4,447,142 - +0.0 4,447,270 + -0.9 4,447,317 + -1.1 4,447,318 - +0.6 4,447,318 - +1.8 4,447,334 + +1.3 4,447,334 + -0.4 4,447,334 + +0.0 4,447,334 + +1.0 4,447,335 - +0.8 4,447,335 - -0.8 4,447,335 - -2.5 4,447,381 + +1.5 4,447,382 - -2.2 4,447,416 + +2.0 4,447,446 - -2.2 4,447,508 + -0.2 4,447,694 + PS417_20470 0.19 +0.4 4,447,695 - PS417_20470 0.19 +0.6 4,447,695 - PS417_20470 0.19 +1.3 4,447,730 - PS417_20470 0.23 -0.9 4,447,771 + PS417_20470 0.28 +3.4 4,447,772 - PS417_20470 0.28 -2.0 4,447,837 + PS417_20470 0.36 +2.6 4,447,875 + PS417_20470 0.40 +0.7 4,447,876 - PS417_20470 0.41 -0.4 4,447,876 - PS417_20470 0.41 +0.8 4,447,876 - PS417_20470 0.41 -0.4 4,447,876 - PS417_20470 0.41 +0.3 4,447,924 - PS417_20470 0.46 +0.1 4,447,924 - PS417_20470 0.46 +0.3 4,447,987 + PS417_20470 0.54 -0.0 4,447,996 + PS417_20470 0.55 +0.0 4,448,172 + PS417_20470 0.76 -2.4 4,448,172 + PS417_20470 0.76 -1.1 4,448,172 + PS417_20470 0.76 +0.2 4,448,172 + PS417_20470 0.76 -1.9 4,448,173 - PS417_20470 0.77 -0.8 4,448,173 - PS417_20470 0.77 -3.6 4,448,173 - PS417_20470 0.77 -1.2 4,448,173 - PS417_20470 0.77 -1.7 4,448,173 - PS417_20470 0.77 +1.0 4,448,173 - PS417_20470 0.77 +0.4 4,448,173 - PS417_20470 0.77 -1.1 4,448,217 + PS417_20470 0.82 -0.2 4,448,217 + PS417_20470 0.82 +0.9 4,448,217 + PS417_20470 0.82 -3.3 4,448,218 - PS417_20470 0.82 -1.0 4,448,218 - PS417_20470 0.82 -1.2 4,448,258 + PS417_20470 0.87 -2.6 4,448,259 - PS417_20470 0.87 -0.1
Or see this region's nucleotide sequence