Strain Fitness in Pseudomonas simiae WCS417 around PS417_20465

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20460 and PS417_20465 overlap by 4 nucleotidesPS417_20465 and PS417_20470 are separated by 268 nucleotides PS417_20460: PS417_20460 - chromosome segregation protein SMC, at 4,443,110 to 4,445,275 _20460 PS417_20465: PS417_20465 - hypothetical protein, at 4,445,272 to 4,447,272 _20465 PS417_20470: PS417_20470 - hypothetical protein, at 4,447,541 to 4,448,365 _20470 Position (kb) 4445 4446 4447 4448Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4444.335 kb on + strand, within PS417_20460at 4444.335 kb on + strand, within PS417_20460at 4444.335 kb on + strand, within PS417_20460at 4444.335 kb on + strand, within PS417_20460at 4444.335 kb on + strand, within PS417_20460at 4444.335 kb on + strand, within PS417_20460at 4444.336 kb on - strand, within PS417_20460at 4444.336 kb on - strand, within PS417_20460at 4444.336 kb on - strand, within PS417_20460at 4444.336 kb on - strand, within PS417_20460at 4444.339 kb on - strand, within PS417_20460at 4444.361 kb on + strand, within PS417_20460at 4444.404 kb on - strand, within PS417_20460at 4444.501 kb on - strand, within PS417_20460at 4444.649 kb on - strand, within PS417_20460at 4444.842 kb on + strand, within PS417_20460at 4444.843 kb on - strandat 4445.054 kb on - strand, within PS417_20460at 4445.057 kb on + strand, within PS417_20460at 4445.057 kb on + strand, within PS417_20460at 4445.057 kb on + strand, within PS417_20460at 4445.057 kb on + strand, within PS417_20460at 4445.057 kb on + strand, within PS417_20460at 4445.058 kb on - strand, within PS417_20460at 4445.058 kb on - strand, within PS417_20460at 4445.058 kb on - strand, within PS417_20460at 4445.058 kb on - strand, within PS417_20460at 4445.058 kb on - strand, within PS417_20460at 4445.058 kb on - strand, within PS417_20460at 4445.080 kb on - strandat 4445.105 kb on + strandat 4445.106 kb on - strandat 4445.132 kb on + strandat 4445.204 kb on + strandat 4445.204 kb on + strandat 4445.204 kb on + strandat 4445.204 kb on + strandat 4445.205 kb on - strandat 4445.205 kb on - strandat 4445.226 kb on + strandat 4445.337 kb on + strandat 4445.337 kb on + strandat 4445.337 kb on + strandat 4445.337 kb on + strandat 4445.338 kb on - strandat 4445.551 kb on - strand, within PS417_20465at 4445.587 kb on + strand, within PS417_20465at 4445.587 kb on + strand, within PS417_20465at 4445.848 kb on - strand, within PS417_20465at 4445.848 kb on - strand, within PS417_20465at 4445.858 kb on - strand, within PS417_20465at 4445.964 kb on - strand, within PS417_20465at 4445.964 kb on - strand, within PS417_20465at 4446.041 kb on - strand, within PS417_20465at 4446.077 kb on + strand, within PS417_20465at 4446.077 kb on + strand, within PS417_20465at 4446.078 kb on - strand, within PS417_20465at 4446.078 kb on - strand, within PS417_20465at 4446.078 kb on - strand, within PS417_20465at 4446.078 kb on - strand, within PS417_20465at 4446.205 kb on - strand, within PS417_20465at 4446.272 kb on + strand, within PS417_20465at 4446.273 kb on - strand, within PS417_20465at 4446.273 kb on - strand, within PS417_20465at 4446.327 kb on + strand, within PS417_20465at 4446.328 kb on - strand, within PS417_20465at 4446.493 kb on + strand, within PS417_20465at 4446.494 kb on - strand, within PS417_20465at 4446.494 kb on - strand, within PS417_20465at 4446.494 kb on - strand, within PS417_20465at 4446.513 kb on - strand, within PS417_20465at 4446.752 kb on + strand, within PS417_20465at 4446.752 kb on + strand, within PS417_20465at 4446.752 kb on + strand, within PS417_20465at 4446.752 kb on + strand, within PS417_20465at 4446.930 kb on + strand, within PS417_20465at 4446.930 kb on + strand, within PS417_20465at 4446.930 kb on + strand, within PS417_20465at 4446.930 kb on + strand, within PS417_20465at 4446.981 kb on + strand, within PS417_20465at 4446.982 kb on - strand, within PS417_20465at 4446.982 kb on - strand, within PS417_20465at 4447.033 kb on + strand, within PS417_20465at 4447.033 kb on + strand, within PS417_20465at 4447.034 kb on - strand, within PS417_20465at 4447.039 kb on + strand, within PS417_20465at 4447.039 kb on + strand, within PS417_20465at 4447.039 kb on + strand, within PS417_20465at 4447.040 kb on - strand, within PS417_20465at 4447.040 kb on - strand, within PS417_20465at 4447.110 kb on + strandat 4447.141 kb on + strandat 4447.141 kb on + strandat 4447.141 kb on + strandat 4447.141 kb on + strandat 4447.141 kb on + strandat 4447.141 kb on + strandat 4447.141 kb on + strandat 4447.142 kb on - strandat 4447.142 kb on - strandat 4447.142 kb on - strandat 4447.142 kb on - strandat 4447.142 kb on - strandat 4447.142 kb on - strandat 4447.270 kb on + strandat 4447.317 kb on + strandat 4447.318 kb on - strandat 4447.318 kb on - strandat 4447.334 kb on + strandat 4447.334 kb on + strandat 4447.334 kb on + strandat 4447.334 kb on + strandat 4447.335 kb on - strandat 4447.335 kb on - strandat 4447.335 kb on - strandat 4447.381 kb on + strandat 4447.382 kb on - strandat 4447.416 kb on + strandat 4447.446 kb on - strandat 4447.508 kb on + strandat 4447.694 kb on + strand, within PS417_20470at 4447.695 kb on - strand, within PS417_20470at 4447.695 kb on - strand, within PS417_20470at 4447.730 kb on - strand, within PS417_20470at 4447.771 kb on + strand, within PS417_20470at 4447.772 kb on - strand, within PS417_20470at 4447.837 kb on + strand, within PS417_20470at 4447.875 kb on + strand, within PS417_20470at 4447.876 kb on - strand, within PS417_20470at 4447.876 kb on - strand, within PS417_20470at 4447.876 kb on - strand, within PS417_20470at 4447.876 kb on - strand, within PS417_20470at 4447.924 kb on - strand, within PS417_20470at 4447.924 kb on - strand, within PS417_20470at 4447.987 kb on + strand, within PS417_20470at 4447.996 kb on + strand, within PS417_20470at 4448.172 kb on + strand, within PS417_20470at 4448.172 kb on + strand, within PS417_20470at 4448.172 kb on + strand, within PS417_20470at 4448.172 kb on + strand, within PS417_20470at 4448.173 kb on - strand, within PS417_20470at 4448.173 kb on - strand, within PS417_20470at 4448.173 kb on - strand, within PS417_20470at 4448.173 kb on - strand, within PS417_20470at 4448.173 kb on - strand, within PS417_20470at 4448.173 kb on - strand, within PS417_20470at 4448.173 kb on - strand, within PS417_20470at 4448.217 kb on + strand, within PS417_20470at 4448.217 kb on + strand, within PS417_20470at 4448.217 kb on + strand, within PS417_20470at 4448.218 kb on - strand, within PS417_20470at 4448.218 kb on - strand, within PS417_20470at 4448.258 kb on + strand, within PS417_20470at 4448.259 kb on - strand, within PS417_20470

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,444,335 + PS417_20460 0.57 -0.6
4,444,335 + PS417_20460 0.57 -1.0
4,444,335 + PS417_20460 0.57 +1.3
4,444,335 + PS417_20460 0.57 -0.2
4,444,335 + PS417_20460 0.57 +1.1
4,444,335 + PS417_20460 0.57 -1.5
4,444,336 - PS417_20460 0.57 -0.6
4,444,336 - PS417_20460 0.57 -1.1
4,444,336 - PS417_20460 0.57 -0.2
4,444,336 - PS417_20460 0.57 +3.5
4,444,339 - PS417_20460 0.57 -0.7
4,444,361 + PS417_20460 0.58 +0.2
4,444,404 - PS417_20460 0.60 +0.6
4,444,501 - PS417_20460 0.64 +0.1
4,444,649 - PS417_20460 0.71 -1.1
4,444,842 + PS417_20460 0.80 -3.3
4,444,843 - -0.2
4,445,054 - PS417_20460 0.90 -0.3
4,445,057 + PS417_20460 0.90 -0.3
4,445,057 + PS417_20460 0.90 +1.2
4,445,057 + PS417_20460 0.90 +0.1
4,445,057 + PS417_20460 0.90 +0.6
4,445,057 + PS417_20460 0.90 -1.1
4,445,058 - PS417_20460 0.90 -0.3
4,445,058 - PS417_20460 0.90 +2.9
4,445,058 - PS417_20460 0.90 +0.7
4,445,058 - PS417_20460 0.90 -2.8
4,445,058 - PS417_20460 0.90 +0.1
4,445,058 - PS417_20460 0.90 +0.1
4,445,080 - -0.6
4,445,105 + -2.6
4,445,106 - +0.9
4,445,132 + +1.4
4,445,204 + +0.8
4,445,204 + -0.4
4,445,204 + -0.2
4,445,204 + +1.8
4,445,205 - +1.2
4,445,205 - -0.2
4,445,226 + -1.4
4,445,337 + +0.4
4,445,337 + +0.0
4,445,337 + -0.2
4,445,337 + -0.6
4,445,338 - -0.6
4,445,551 - PS417_20465 0.14 -1.8
4,445,587 + PS417_20465 0.16 +2.2
4,445,587 + PS417_20465 0.16 -0.7
4,445,848 - PS417_20465 0.29 +0.1
4,445,848 - PS417_20465 0.29 -0.4
4,445,858 - PS417_20465 0.29 +1.0
4,445,964 - PS417_20465 0.35 +0.5
4,445,964 - PS417_20465 0.35 -1.8
4,446,041 - PS417_20465 0.38 -0.5
4,446,077 + PS417_20465 0.40 -0.4
4,446,077 + PS417_20465 0.40 +2.5
4,446,078 - PS417_20465 0.40 +1.3
4,446,078 - PS417_20465 0.40 +5.2
4,446,078 - PS417_20465 0.40 -1.6
4,446,078 - PS417_20465 0.40 +1.2
4,446,205 - PS417_20465 0.47 +1.4
4,446,272 + PS417_20465 0.50 -0.8
4,446,273 - PS417_20465 0.50 +0.0
4,446,273 - PS417_20465 0.50 -2.6
4,446,327 + PS417_20465 0.53 +1.8
4,446,328 - PS417_20465 0.53 -0.9
4,446,493 + PS417_20465 0.61 -1.9
4,446,494 - PS417_20465 0.61 +0.1
4,446,494 - PS417_20465 0.61 +0.5
4,446,494 - PS417_20465 0.61 +0.4
4,446,513 - PS417_20465 0.62 -1.2
4,446,752 + PS417_20465 0.74 +0.2
4,446,752 + PS417_20465 0.74 -0.3
4,446,752 + PS417_20465 0.74 +0.4
4,446,752 + PS417_20465 0.74 +1.8
4,446,930 + PS417_20465 0.83 +0.0
4,446,930 + PS417_20465 0.83 -0.5
4,446,930 + PS417_20465 0.83 +1.0
4,446,930 + PS417_20465 0.83 -1.0
4,446,981 + PS417_20465 0.85 +0.2
4,446,982 - PS417_20465 0.85 +0.5
4,446,982 - PS417_20465 0.85 +0.1
4,447,033 + PS417_20465 0.88 +0.0
4,447,033 + PS417_20465 0.88 -0.9
4,447,034 - PS417_20465 0.88 +1.5
4,447,039 + PS417_20465 0.88 +1.6
4,447,039 + PS417_20465 0.88 -0.6
4,447,039 + PS417_20465 0.88 -0.4
4,447,040 - PS417_20465 0.88 +1.4
4,447,040 - PS417_20465 0.88 -1.9
4,447,110 + -0.1
4,447,141 + +0.3
4,447,141 + +1.8
4,447,141 + -0.6
4,447,141 + -0.4
4,447,141 + +0.5
4,447,141 + -0.9
4,447,141 + +0.6
4,447,142 - -1.2
4,447,142 - -1.1
4,447,142 - -0.8
4,447,142 - +0.2
4,447,142 - +0.8
4,447,142 - +0.0
4,447,270 + -0.9
4,447,317 + -1.1
4,447,318 - +0.6
4,447,318 - +1.8
4,447,334 + +1.3
4,447,334 + -0.4
4,447,334 + +0.0
4,447,334 + +1.0
4,447,335 - +0.8
4,447,335 - -0.8
4,447,335 - -2.5
4,447,381 + +1.5
4,447,382 - -2.2
4,447,416 + +2.0
4,447,446 - -2.2
4,447,508 + -0.2
4,447,694 + PS417_20470 0.19 +0.4
4,447,695 - PS417_20470 0.19 +0.6
4,447,695 - PS417_20470 0.19 +1.3
4,447,730 - PS417_20470 0.23 -0.9
4,447,771 + PS417_20470 0.28 +3.4
4,447,772 - PS417_20470 0.28 -2.0
4,447,837 + PS417_20470 0.36 +2.6
4,447,875 + PS417_20470 0.40 +0.7
4,447,876 - PS417_20470 0.41 -0.4
4,447,876 - PS417_20470 0.41 +0.8
4,447,876 - PS417_20470 0.41 -0.4
4,447,876 - PS417_20470 0.41 +0.3
4,447,924 - PS417_20470 0.46 +0.1
4,447,924 - PS417_20470 0.46 +0.3
4,447,987 + PS417_20470 0.54 -0.0
4,447,996 + PS417_20470 0.55 +0.0
4,448,172 + PS417_20470 0.76 -2.4
4,448,172 + PS417_20470 0.76 -1.1
4,448,172 + PS417_20470 0.76 +0.2
4,448,172 + PS417_20470 0.76 -1.9
4,448,173 - PS417_20470 0.77 -0.8
4,448,173 - PS417_20470 0.77 -3.6
4,448,173 - PS417_20470 0.77 -1.2
4,448,173 - PS417_20470 0.77 -1.7
4,448,173 - PS417_20470 0.77 +1.0
4,448,173 - PS417_20470 0.77 +0.4
4,448,173 - PS417_20470 0.77 -1.1
4,448,217 + PS417_20470 0.82 -0.2
4,448,217 + PS417_20470 0.82 +0.9
4,448,217 + PS417_20470 0.82 -3.3
4,448,218 - PS417_20470 0.82 -1.0
4,448,218 - PS417_20470 0.82 -1.2
4,448,258 + PS417_20470 0.87 -2.6
4,448,259 - PS417_20470 0.87 -0.1

Or see this region's nucleotide sequence