Strain Fitness in Pseudomonas simiae WCS417 around PS417_02010

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_02005 and PS417_02010 are separated by 263 nucleotidesPS417_02010 and PS417_02015 are separated by 118 nucleotides PS417_02005: PS417_02005 - glutamate synthase, at 447,911 to 449,329 _02005 PS417_02010: PS417_02010 - uroporphyrinogen decarboxylase, at 449,593 to 450,660 _02010 PS417_02015: PS417_02015 - membrane protein, at 450,779 to 452,053 _02015 Position (kb) 449 450 451Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 448.614 kb on - strand, within PS417_02005at 448.614 kb on - strand, within PS417_02005at 448.643 kb on + strand, within PS417_02005at 448.644 kb on - strand, within PS417_02005at 448.644 kb on - strand, within PS417_02005at 448.644 kb on - strand, within PS417_02005at 448.644 kb on - strand, within PS417_02005at 448.649 kb on + strand, within PS417_02005at 448.650 kb on - strand, within PS417_02005at 448.650 kb on - strand, within PS417_02005at 448.691 kb on + strand, within PS417_02005at 448.692 kb on - strand, within PS417_02005at 448.946 kb on + strand, within PS417_02005at 448.946 kb on + strand, within PS417_02005at 448.947 kb on - strand, within PS417_02005at 449.397 kb on + strandat 449.398 kb on - strandat 450.659 kb on - strandat 450.729 kb on + strandat 450.922 kb on + strand, within PS417_02015at 450.936 kb on + strand, within PS417_02015at 450.937 kb on - strand, within PS417_02015at 450.939 kb on + strand, within PS417_02015at 450.939 kb on + strand, within PS417_02015at 450.951 kb on + strand, within PS417_02015at 451.182 kb on + strand, within PS417_02015at 451.182 kb on + strand, within PS417_02015at 451.182 kb on + strand, within PS417_02015at 451.182 kb on + strand, within PS417_02015at 451.183 kb on - strand, within PS417_02015at 451.187 kb on - strand, within PS417_02015at 451.197 kb on + strand, within PS417_02015at 451.198 kb on - strand, within PS417_02015at 451.198 kb on - strand, within PS417_02015at 451.240 kb on - strand, within PS417_02015at 451.269 kb on + strand, within PS417_02015at 451.269 kb on + strand, within PS417_02015at 451.270 kb on - strand, within PS417_02015at 451.270 kb on - strand, within PS417_02015at 451.554 kb on + strand, within PS417_02015at 451.555 kb on - strand, within PS417_02015at 451.555 kb on - strand, within PS417_02015at 451.555 kb on - strand, within PS417_02015at 451.555 kb on - strand, within PS417_02015at 451.606 kb on - strand, within PS417_02015at 451.606 kb on - strand, within PS417_02015

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
remove
448,614 - PS417_02005 0.50 -5.6
448,614 - PS417_02005 0.50 -5.6
448,643 + PS417_02005 0.52 -2.8
448,644 - PS417_02005 0.52 -5.1
448,644 - PS417_02005 0.52 -2.6
448,644 - PS417_02005 0.52 -1.0
448,644 - PS417_02005 0.52 -3.0
448,649 + PS417_02005 0.52 -2.4
448,650 - PS417_02005 0.52 -3.2
448,650 - PS417_02005 0.52 -3.1
448,691 + PS417_02005 0.55 -3.9
448,692 - PS417_02005 0.55 -2.4
448,946 + PS417_02005 0.73 -5.4
448,946 + PS417_02005 0.73 -2.2
448,947 - PS417_02005 0.73 -2.0
449,397 + +1.0
449,398 - -0.1
450,659 - -0.5
450,729 + +1.0
450,922 + PS417_02015 0.11 +0.1
450,936 + PS417_02015 0.12 +0.3
450,937 - PS417_02015 0.12 +1.5
450,939 + PS417_02015 0.13 -2.3
450,939 + PS417_02015 0.13 -0.2
450,951 + PS417_02015 0.13 +0.9
451,182 + PS417_02015 0.32 -1.1
451,182 + PS417_02015 0.32 +0.4
451,182 + PS417_02015 0.32 +3.0
451,182 + PS417_02015 0.32 -0.3
451,183 - PS417_02015 0.32 -0.3
451,187 - PS417_02015 0.32 +0.7
451,197 + PS417_02015 0.33 -0.9
451,198 - PS417_02015 0.33 -0.3
451,198 - PS417_02015 0.33 +0.4
451,240 - PS417_02015 0.36 -0.3
451,269 + PS417_02015 0.38 +2.0
451,269 + PS417_02015 0.38 -0.0
451,270 - PS417_02015 0.39 +1.0
451,270 - PS417_02015 0.39 +0.0
451,554 + PS417_02015 0.61 -2.2
451,555 - PS417_02015 0.61 +3.0
451,555 - PS417_02015 0.61 -1.7
451,555 - PS417_02015 0.61 -2.0
451,555 - PS417_02015 0.61 -0.3
451,606 - PS417_02015 0.65 -1.3
451,606 - PS417_02015 0.65 +1.3

Or see this region's nucleotide sequence