Strain Fitness in Pseudomonas simiae WCS417 around PS417_01900

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01895 and PS417_01900 are separated by 88 nucleotidesPS417_01900 and PS417_01905 are separated by 149 nucleotides PS417_01895: PS417_01895 - poly(R)-hydroxyalkanoic acid synthase, at 418,453 to 420,135 _01895 PS417_01900: PS417_01900 - poly(3-hydroxyalkanoate) depolymerase, at 420,224 to 421,069 _01900 PS417_01905: PS417_01905 - poly(R)-hydroxyalkanoic acid synthase, at 421,219 to 422,898 _01905 Position (kb) 420 421 422Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 419.327 kb on + strand, within PS417_01895at 419.328 kb on - strand, within PS417_01895at 419.328 kb on - strand, within PS417_01895at 419.328 kb on - strand, within PS417_01895at 419.328 kb on - strand, within PS417_01895at 419.356 kb on + strandat 419.356 kb on + strand, within PS417_01895at 419.448 kb on + strand, within PS417_01895at 419.448 kb on + strand, within PS417_01895at 419.448 kb on + strand, within PS417_01895at 419.450 kb on + strand, within PS417_01895at 419.451 kb on - strand, within PS417_01895at 419.451 kb on - strand, within PS417_01895at 419.453 kb on + strand, within PS417_01895at 419.454 kb on - strand, within PS417_01895at 419.454 kb on - strand, within PS417_01895at 419.454 kb on - strand, within PS417_01895at 419.495 kb on + strand, within PS417_01895at 419.519 kb on + strand, within PS417_01895at 419.519 kb on + strand, within PS417_01895at 419.520 kb on - strand, within PS417_01895at 419.846 kb on + strand, within PS417_01895at 419.846 kb on + strand, within PS417_01895at 419.847 kb on - strand, within PS417_01895at 420.188 kb on + strandat 420.225 kb on + strandat 420.259 kb on + strandat 420.260 kb on - strandat 420.499 kb on - strand, within PS417_01900at 420.622 kb on - strand, within PS417_01900at 420.673 kb on + strand, within PS417_01900at 420.793 kb on - strand, within PS417_01900at 420.802 kb on - strand, within PS417_01900at 421.046 kb on - strandat 421.094 kb on + strandat 421.094 kb on + strandat 421.094 kb on + strandat 421.094 kb on + strandat 421.095 kb on - strandat 421.095 kb on - strandat 421.095 kb on - strandat 421.095 kb on - strandat 421.095 kb on - strandat 421.095 kb on - strandat 421.095 kb on - strandat 421.235 kb on + strandat 421.235 kb on + strandat 421.235 kb on + strandat 421.235 kb on + strandat 421.235 kb on + strandat 421.236 kb on - strandat 421.236 kb on - strandat 421.236 kb on - strandat 421.236 kb on - strandat 421.236 kb on - strandat 421.236 kb on - strandat 421.272 kb on + strandat 421.275 kb on + strandat 421.276 kb on - strandat 421.279 kb on + strandat 421.279 kb on + strandat 421.280 kb on - strandat 421.280 kb on - strandat 421.282 kb on + strandat 421.481 kb on - strand, within PS417_01905at 421.481 kb on - strand, within PS417_01905at 421.481 kb on - strand, within PS417_01905at 421.568 kb on + strandat 421.568 kb on + strand, within PS417_01905at 421.751 kb on + strand, within PS417_01905at 421.755 kb on + strand, within PS417_01905at 421.755 kb on + strand, within PS417_01905at 421.756 kb on - strand, within PS417_01905at 421.756 kb on - strand, within PS417_01905at 421.767 kb on - strand, within PS417_01905at 421.974 kb on - strand, within PS417_01905

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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419,327 + PS417_01895 0.52 +0.4
419,328 - PS417_01895 0.52 +0.9
419,328 - PS417_01895 0.52 +2.8
419,328 - PS417_01895 0.52 -1.1
419,328 - PS417_01895 0.52 +1.6
419,356 + +0.5
419,356 + PS417_01895 0.54 +0.5
419,448 + PS417_01895 0.59 -0.3
419,448 + PS417_01895 0.59 -1.5
419,448 + PS417_01895 0.59 +0.3
419,450 + PS417_01895 0.59 +0.3
419,451 - PS417_01895 0.59 +0.3
419,451 - PS417_01895 0.59 +1.6
419,453 + PS417_01895 0.59 -0.5
419,454 - PS417_01895 0.59 -1.1
419,454 - PS417_01895 0.59 -0.1
419,454 - PS417_01895 0.59 -0.2
419,495 + PS417_01895 0.62 +0.4
419,519 + PS417_01895 0.63 +1.9
419,519 + PS417_01895 0.63 +1.0
419,520 - PS417_01895 0.63 +0.4
419,846 + PS417_01895 0.83 +0.3
419,846 + PS417_01895 0.83 +0.7
419,847 - PS417_01895 0.83 +0.8
420,188 + +1.5
420,225 + +0.4
420,259 + -0.7
420,260 - -2.8
420,499 - PS417_01900 0.33 +0.6
420,622 - PS417_01900 0.47 +1.6
420,673 + PS417_01900 0.53 +1.1
420,793 - PS417_01900 0.67 -0.3
420,802 - PS417_01900 0.68 +1.8
421,046 - +1.3
421,094 + -0.7
421,094 + -2.3
421,094 + +2.8
421,094 + +0.0
421,095 - +1.3
421,095 - -0.3
421,095 - +1.2
421,095 - +3.1
421,095 - +1.7
421,095 - -0.5
421,095 - +0.7
421,235 + -0.2
421,235 + +1.1
421,235 + +1.1
421,235 + -1.3
421,235 + +1.0
421,236 - +0.7
421,236 - -0.4
421,236 - -2.1
421,236 - +0.0
421,236 - -0.0
421,236 - -0.5
421,272 + +0.5
421,275 + +0.9
421,276 - +1.3
421,279 + -2.0
421,279 + +0.2
421,280 - +0.8
421,280 - +0.1
421,282 + +0.3
421,481 - PS417_01905 0.16 -1.3
421,481 - PS417_01905 0.16 +0.3
421,481 - PS417_01905 0.16 +0.5
421,568 + -0.4
421,568 + PS417_01905 0.21 -0.9
421,751 + PS417_01905 0.32 -1.4
421,755 + PS417_01905 0.32 -0.5
421,755 + PS417_01905 0.32 +2.1
421,756 - PS417_01905 0.32 -1.8
421,756 - PS417_01905 0.32 +0.5
421,767 - PS417_01905 0.33 -1.0
421,974 - PS417_01905 0.45 +0.4

Or see this region's nucleotide sequence