Strain Fitness in Pseudomonas simiae WCS417 around PS417_18900

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18895 and PS417_18900 are separated by 246 nucleotidesPS417_18900 and PS417_18905 are separated by 241 nucleotides PS417_18895: PS417_18895 - glucarate dehydratase, at 4,091,761 to 4,093,086 _18895 PS417_18900: PS417_18900 - alkanesulfonate transporter, at 4,093,333 to 4,094,256 _18900 PS417_18905: PS417_18905 - acyl-CoA dehydrogenase, at 4,094,498 to 4,095,739 _18905 Position (kb) 4093 4094 4095Strain fitness (log2 ratio) -3 -2 -1 0 1at 4092.343 kb on + strand, within PS417_18895at 4092.343 kb on + strand, within PS417_18895at 4092.512 kb on + strand, within PS417_18895at 4092.513 kb on - strand, within PS417_18895at 4092.783 kb on + strand, within PS417_18895at 4092.985 kb on + strandat 4093.269 kb on + strandat 4093.270 kb on - strandat 4093.270 kb on - strandat 4093.307 kb on - strandat 4093.309 kb on + strandat 4093.309 kb on + strandat 4093.309 kb on + strandat 4093.310 kb on - strandat 4093.310 kb on - strandat 4093.310 kb on - strandat 4093.310 kb on - strandat 4093.310 kb on - strandat 4093.310 kb on - strandat 4093.530 kb on - strand, within PS417_18900at 4093.637 kb on + strand, within PS417_18900at 4093.709 kb on + strand, within PS417_18900at 4093.710 kb on - strand, within PS417_18900at 4093.781 kb on + strand, within PS417_18900at 4093.832 kb on + strand, within PS417_18900at 4093.832 kb on + strand, within PS417_18900at 4093.832 kb on + strand, within PS417_18900at 4093.832 kb on + strand, within PS417_18900at 4093.833 kb on - strand, within PS417_18900at 4093.960 kb on + strand, within PS417_18900at 4094.301 kb on + strandat 4094.301 kb on + strandat 4094.302 kb on - strandat 4094.386 kb on + strandat 4094.435 kb on + strandat 4094.436 kb on - strandat 4094.996 kb on + strand, within PS417_18905at 4095.172 kb on - strand, within PS417_18905

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,092,343 + PS417_18895 0.44 +0.1
4,092,343 + PS417_18895 0.44 +0.1
4,092,512 + PS417_18895 0.57 +0.4
4,092,513 - PS417_18895 0.57 +0.8
4,092,783 + PS417_18895 0.77 -0.1
4,092,985 + +0.0
4,093,269 + +0.1
4,093,270 - -0.4
4,093,270 - -2.8
4,093,307 - +1.5
4,093,309 + -0.9
4,093,309 + +1.0
4,093,309 + -1.4
4,093,310 - +0.2
4,093,310 - -1.5
4,093,310 - -1.1
4,093,310 - -0.7
4,093,310 - -1.5
4,093,310 - +0.0
4,093,530 - PS417_18900 0.21 -1.3
4,093,637 + PS417_18900 0.33 +0.7
4,093,709 + PS417_18900 0.41 -0.1
4,093,710 - PS417_18900 0.41 +0.4
4,093,781 + PS417_18900 0.48 +0.7
4,093,832 + PS417_18900 0.54 -0.5
4,093,832 + PS417_18900 0.54 -0.0
4,093,832 + PS417_18900 0.54 +0.7
4,093,832 + PS417_18900 0.54 -1.0
4,093,833 - PS417_18900 0.54 -0.0
4,093,960 + PS417_18900 0.68 -0.9
4,094,301 + -0.6
4,094,301 + -0.2
4,094,302 - -1.1
4,094,386 + -1.0
4,094,435 + -1.2
4,094,436 - +1.0
4,094,996 + PS417_18905 0.40 -1.0
4,095,172 - PS417_18905 0.54 -0.6

Or see this region's nucleotide sequence