Strain Fitness in Pseudomonas simiae WCS417 around PS417_18620

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18615 and PS417_18620 are separated by 66 nucleotidesPS417_18620 and PS417_18625 are separated by 512 nucleotides PS417_18615: PS417_18615 - hypothetical protein, at 4,045,256 to 4,047,181 _18615 PS417_18620: PS417_18620 - hypothetical protein, at 4,047,248 to 4,047,766 _18620 PS417_18625: PS417_18625 - hypothetical protein, at 4,048,279 to 4,049,571 _18625 Position (kb) 4047 4048Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4046.552 kb on - strand, within PS417_18615at 4046.552 kb on - strand, within PS417_18615at 4046.552 kb on - strand, within PS417_18615at 4046.552 kb on - strand, within PS417_18615at 4046.553 kb on + strand, within PS417_18615at 4046.553 kb on + strand, within PS417_18615at 4046.553 kb on + strand, within PS417_18615at 4046.553 kb on + strandat 4046.553 kb on + strand, within PS417_18615at 4046.553 kb on + strand, within PS417_18615at 4046.553 kb on + strand, within PS417_18615at 4046.553 kb on + strand, within PS417_18615at 4046.554 kb on - strand, within PS417_18615at 4046.554 kb on - strand, within PS417_18615at 4046.554 kb on - strand, within PS417_18615at 4046.554 kb on - strand, within PS417_18615at 4046.554 kb on - strand, within PS417_18615at 4046.554 kb on - strandat 4046.554 kb on - strandat 4046.554 kb on - strandat 4046.554 kb on - strand, within PS417_18615at 4046.557 kb on + strand, within PS417_18615at 4046.557 kb on + strand, within PS417_18615at 4046.557 kb on + strand, within PS417_18615at 4046.557 kb on + strand, within PS417_18615at 4046.557 kb on + strand, within PS417_18615at 4046.557 kb on + strand, within PS417_18615at 4046.558 kb on - strand, within PS417_18615at 4046.558 kb on - strand, within PS417_18615at 4046.558 kb on - strand, within PS417_18615at 4046.558 kb on - strand, within PS417_18615at 4046.558 kb on - strand, within PS417_18615at 4046.558 kb on - strand, within PS417_18615at 4046.558 kb on - strandat 4046.558 kb on - strand, within PS417_18615at 4046.559 kb on + strand, within PS417_18615at 4046.559 kb on + strand, within PS417_18615at 4046.559 kb on + strand, within PS417_18615at 4046.559 kb on + strand, within PS417_18615at 4046.560 kb on - strand, within PS417_18615at 4046.560 kb on - strand, within PS417_18615at 4046.560 kb on - strand, within PS417_18615at 4046.560 kb on - strand, within PS417_18615at 4046.560 kb on - strand, within PS417_18615at 4046.560 kb on - strand, within PS417_18615at 4046.611 kb on - strand, within PS417_18615at 4046.634 kb on + strand, within PS417_18615at 4046.634 kb on + strand, within PS417_18615at 4046.634 kb on + strand, within PS417_18615at 4046.634 kb on + strand, within PS417_18615at 4046.634 kb on + strand, within PS417_18615at 4046.634 kb on + strand, within PS417_18615at 4046.635 kb on - strand, within PS417_18615at 4046.635 kb on - strand, within PS417_18615at 4046.635 kb on - strand, within PS417_18615at 4046.635 kb on - strand, within PS417_18615at 4046.668 kb on + strand, within PS417_18615at 4046.822 kb on - strand, within PS417_18615at 4046.932 kb on - strand, within PS417_18615at 4046.932 kb on - strandat 4046.976 kb on - strand, within PS417_18615at 4046.976 kb on - strand, within PS417_18615at 4047.146 kb on - strandat 4047.175 kb on + strandat 4047.203 kb on + strandat 4047.204 kb on - strandat 4047.300 kb on + strand, within PS417_18620at 4047.301 kb on - strandat 4047.588 kb on - strand, within PS417_18620at 4047.705 kb on + strand, within PS417_18620at 4047.705 kb on + strand, within PS417_18620at 4047.705 kb on + strand, within PS417_18620at 4047.706 kb on - strand, within PS417_18620at 4047.706 kb on - strand, within PS417_18620at 4047.709 kb on + strand, within PS417_18620at 4047.806 kb on - strandat 4047.850 kb on + strandat 4047.851 kb on - strandat 4047.851 kb on - strandat 4047.897 kb on - strandat 4047.917 kb on + strandat 4047.917 kb on + strandat 4047.917 kb on + strandat 4048.036 kb on + strandat 4048.048 kb on + strandat 4048.049 kb on - strandat 4048.087 kb on + strandat 4048.160 kb on - strandat 4048.170 kb on - strandat 4048.253 kb on - strandat 4048.253 kb on - strandat 4048.253 kb on - strandat 4048.333 kb on - strandat 4048.383 kb on + strandat 4048.383 kb on + strandat 4048.383 kb on + strandat 4048.383 kb on + strandat 4048.384 kb on - strandat 4048.384 kb on - strandat 4048.384 kb on - strandat 4048.384 kb on - strandat 4048.384 kb on - strandat 4048.404 kb on + strandat 4048.407 kb on + strandat 4048.407 kb on + strandat 4048.408 kb on - strandat 4048.408 kb on - strandat 4048.408 kb on - strandat 4048.687 kb on + strand, within PS417_18625at 4048.713 kb on + strand, within PS417_18625at 4048.714 kb on - strand, within PS417_18625

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,046,552 - PS417_18615 0.67 +0.1
4,046,552 - PS417_18615 0.67 -0.6
4,046,552 - PS417_18615 0.67 +0.1
4,046,552 - PS417_18615 0.67 +0.1
4,046,553 + PS417_18615 0.67 -0.5
4,046,553 + PS417_18615 0.67 -1.8
4,046,553 + PS417_18615 0.67 +1.3
4,046,553 + -0.4
4,046,553 + PS417_18615 0.67 -1.5
4,046,553 + PS417_18615 0.67 +0.4
4,046,553 + PS417_18615 0.67 +0.7
4,046,553 + PS417_18615 0.67 +1.3
4,046,554 - PS417_18615 0.67 -0.1
4,046,554 - PS417_18615 0.67 -1.0
4,046,554 - PS417_18615 0.67 -1.1
4,046,554 - PS417_18615 0.67 +0.8
4,046,554 - PS417_18615 0.67 -1.6
4,046,554 - -1.0
4,046,554 - +0.4
4,046,554 - +2.1
4,046,554 - PS417_18615 0.67 +1.4
4,046,557 + PS417_18615 0.68 +0.2
4,046,557 + PS417_18615 0.68 +0.8
4,046,557 + PS417_18615 0.68 -0.2
4,046,557 + PS417_18615 0.68 -0.4
4,046,557 + PS417_18615 0.68 -1.3
4,046,557 + PS417_18615 0.68 -1.4
4,046,558 - PS417_18615 0.68 +1.1
4,046,558 - PS417_18615 0.68 +0.9
4,046,558 - PS417_18615 0.68 +4.6
4,046,558 - PS417_18615 0.68 +2.0
4,046,558 - PS417_18615 0.68 +1.8
4,046,558 - PS417_18615 0.68 +0.0
4,046,558 - -0.6
4,046,558 - PS417_18615 0.68 -1.6
4,046,559 + PS417_18615 0.68 -0.0
4,046,559 + PS417_18615 0.68 -0.4
4,046,559 + PS417_18615 0.68 -0.9
4,046,559 + PS417_18615 0.68 -0.4
4,046,560 - PS417_18615 0.68 -1.0
4,046,560 - PS417_18615 0.68 +0.4
4,046,560 - PS417_18615 0.68 +2.1
4,046,560 - PS417_18615 0.68 +0.5
4,046,560 - PS417_18615 0.68 +0.6
4,046,560 - PS417_18615 0.68 -2.2
4,046,611 - PS417_18615 0.70 +0.1
4,046,634 + PS417_18615 0.72 +1.5
4,046,634 + PS417_18615 0.72 -0.6
4,046,634 + PS417_18615 0.72 +0.0
4,046,634 + PS417_18615 0.72 -0.4
4,046,634 + PS417_18615 0.72 -0.2
4,046,634 + PS417_18615 0.72 -3.5
4,046,635 - PS417_18615 0.72 +0.3
4,046,635 - PS417_18615 0.72 -0.9
4,046,635 - PS417_18615 0.72 +1.5
4,046,635 - PS417_18615 0.72 -2.7
4,046,668 + PS417_18615 0.73 -0.9
4,046,822 - PS417_18615 0.81 +0.0
4,046,932 - PS417_18615 0.87 +1.2
4,046,932 - +0.8
4,046,976 - PS417_18615 0.89 +0.7
4,046,976 - PS417_18615 0.89 -1.0
4,047,146 - +0.4
4,047,175 + +0.0
4,047,203 + +0.3
4,047,204 - +1.4
4,047,300 + PS417_18620 0.10 +0.4
4,047,301 - -0.2
4,047,588 - PS417_18620 0.66 -1.3
4,047,705 + PS417_18620 0.88 -0.7
4,047,705 + PS417_18620 0.88 -0.5
4,047,705 + PS417_18620 0.88 -2.3
4,047,706 - PS417_18620 0.88 +0.8
4,047,706 - PS417_18620 0.88 -1.7
4,047,709 + PS417_18620 0.89 +1.7
4,047,806 - -1.6
4,047,850 + +0.5
4,047,851 - +0.2
4,047,851 - -1.2
4,047,897 - -2.3
4,047,917 + -0.3
4,047,917 + +1.3
4,047,917 + +0.1
4,048,036 + -3.2
4,048,048 + -3.3
4,048,049 - -0.5
4,048,087 + -0.1
4,048,160 - -0.4
4,048,170 - -1.0
4,048,253 - -3.5
4,048,253 - -0.2
4,048,253 - -2.1
4,048,333 - -3.3
4,048,383 + -2.6
4,048,383 + -1.2
4,048,383 + +1.1
4,048,383 + -1.0
4,048,384 - -0.0
4,048,384 - -0.8
4,048,384 - -3.0
4,048,384 - +1.2
4,048,384 - -1.3
4,048,404 + -1.7
4,048,407 + -1.0
4,048,407 + +0.4
4,048,408 - +1.6
4,048,408 - -3.3
4,048,408 - +1.1
4,048,687 + PS417_18625 0.32 +1.5
4,048,713 + PS417_18625 0.34 -1.8
4,048,714 - PS417_18625 0.34 -0.3

Or see this region's nucleotide sequence