Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18195 and PS417_18200 are separated by 22 nucleotides PS417_18200 and PS417_18205 are separated by 70 nucleotides
PS417_18195: PS417_18195 - 3-(3-hydroxyphenyl)propionate hydroxylase, at 3,963,325 to 3,964,971
_18195
PS417_18200: PS417_18200 - glyoxalase, at 3,964,994 to 3,965,842
_18200
PS417_18205: PS417_18205 - aldehyde dehydrogenase, at 3,965,913 to 3,967,391
_18205
Position (kb)
3964
3965
3966 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3964.126 kb on + strand, within PS417_18195 at 3964.463 kb on - strand, within PS417_18195 at 3964.769 kb on + strand, within PS417_18195 at 3964.847 kb on - strand at 3964.847 kb on - strand at 3964.847 kb on - strand at 3965.444 kb on + strand, within PS417_18200 at 3965.654 kb on - strand, within PS417_18200 at 3965.801 kb on + strand at 3965.802 kb on - strand at 3965.874 kb on + strand at 3965.875 kb on - strand at 3965.902 kb on - strand at 3965.906 kb on + strand at 3965.907 kb on - strand at 3965.937 kb on + strand at 3965.937 kb on + strand at 3965.959 kb on - strand at 3965.959 kb on - strand at 3966.318 kb on + strand, within PS417_18205 at 3966.318 kb on + strand, within PS417_18205 at 3966.400 kb on - strand, within PS417_18205 at 3966.400 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,964,126 + PS417_18195 0.49 -2.1 3,964,463 - PS417_18195 0.69 +0.4 3,964,769 + PS417_18195 0.88 -0.2 3,964,847 - +0.2 3,964,847 - -3.3 3,964,847 - -0.7 3,965,444 + PS417_18200 0.53 -1.2 3,965,654 - PS417_18200 0.78 -2.4 3,965,801 + -3.8 3,965,802 - -0.5 3,965,874 + +0.9 3,965,875 - +0.0 3,965,902 - +0.1 3,965,906 + -1.1 3,965,907 - -2.0 3,965,937 + +0.1 3,965,937 + -0.9 3,965,959 - -0.0 3,965,959 - -1.0 3,966,318 + PS417_18205 0.27 +1.5 3,966,318 + PS417_18205 0.27 -1.4 3,966,400 - PS417_18205 0.33 +0.9 3,966,400 - +1.3
Or see this region's nucleotide sequence