Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17810 and PS417_17815 are separated by 869 nucleotides PS417_17815 and PS417_17820 are separated by 149 nucleotides
PS417_17810: PS417_17810 - microcin B17-processing protein McbB, at 3,888,018 to 3,888,875
_17810
PS417_17815: PS417_17815 - hypothetical protein, at 3,889,745 to 3,889,975
_17815
PS417_17820: PS417_17820 - hypothetical protein, at 3,890,125 to 3,892,677
_17820
Position (kb)
3889
3890 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3888.869 kb on + strand at 3888.966 kb on + strand at 3888.967 kb on - strand at 3888.977 kb on + strand at 3889.002 kb on - strand at 3889.543 kb on + strand at 3889.690 kb on + strand at 3889.691 kb on - strand at 3890.108 kb on + strand at 3890.108 kb on + strand at 3890.109 kb on - strand at 3890.135 kb on - strand at 3890.167 kb on + strand at 3890.279 kb on + strand at 3890.301 kb on + strand at 3890.308 kb on + strand at 3890.363 kb on + strand at 3890.364 kb on - strand at 3890.431 kb on - strand, within PS417_17820 at 3890.490 kb on - strand, within PS417_17820 at 3890.490 kb on - strand, within PS417_17820 at 3890.545 kb on - strand at 3890.546 kb on + strand, within PS417_17820 at 3890.546 kb on + strand, within PS417_17820 at 3890.546 kb on + strand, within PS417_17820 at 3890.638 kb on + strand, within PS417_17820 at 3890.779 kb on - strand at 3890.841 kb on + strand, within PS417_17820 at 3890.842 kb on - strand, within PS417_17820 at 3890.951 kb on + strand, within PS417_17820 at 3890.969 kb on + strand, within PS417_17820 at 3890.969 kb on + strand, within PS417_17820
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,888,869 + -0.6 3,888,966 + +1.6 3,888,967 - +0.0 3,888,977 + -0.6 3,889,002 - -0.5 3,889,543 + -2.6 3,889,690 + +0.1 3,889,691 - -0.6 3,890,108 + -1.8 3,890,108 + -3.8 3,890,109 - -0.1 3,890,135 - -1.1 3,890,167 + -0.0 3,890,279 + -0.2 3,890,301 + +0.5 3,890,308 + +1.7 3,890,363 + +2.8 3,890,364 - -0.5 3,890,431 - PS417_17820 0.12 -1.2 3,890,490 - PS417_17820 0.14 -0.5 3,890,490 - PS417_17820 0.14 -0.6 3,890,545 - +0.7 3,890,546 + PS417_17820 0.16 -1.8 3,890,546 + PS417_17820 0.16 +1.0 3,890,546 + PS417_17820 0.16 +1.6 3,890,638 + PS417_17820 0.20 +0.1 3,890,779 - -0.9 3,890,841 + PS417_17820 0.28 -0.3 3,890,842 - PS417_17820 0.28 -0.3 3,890,951 + PS417_17820 0.32 +1.3 3,890,969 + PS417_17820 0.33 +1.0 3,890,969 + PS417_17820 0.33 -0.2
Or see this region's nucleotide sequence