Strain Fitness in Pseudomonas simiae WCS417 around PS417_17460

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17450 and PS417_17455 are separated by 3 nucleotidesPS417_17455 and PS417_17460 are separated by 300 nucleotidesPS417_17460 and PS417_17465 are separated by 78 nucleotidesPS417_17465 and PS417_17470 are separated by 38 nucleotides PS417_17450: PS417_17450 - amino acid ABC transporter substrate-binding protein, at 3,812,510 to 3,813,385 _17450 PS417_17455: PS417_17455 - cytochrome C, at 3,813,389 to 3,813,850 _17455 PS417_17460: PS417_17460 - Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data), at 3,814,151 to 3,815,998 _17460 PS417_17465: PS417_17465 - hypothetical protein, at 3,816,077 to 3,816,724 _17465 PS417_17470: PS417_17470 - LuxR family transcriptional regulator, at 3,816,763 to 3,817,389 _17470 Position (kb) 3814 3815 3816Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3813.312 kb on + strandat 3813.312 kb on + strandat 3813.313 kb on - strandat 3813.369 kb on + strandat 3813.391 kb on - strandat 3813.418 kb on - strandat 3813.418 kb on - strandat 3813.474 kb on + strand, within PS417_17455at 3813.474 kb on + strand, within PS417_17455at 3813.474 kb on + strand, within PS417_17455at 3813.475 kb on - strandat 3813.475 kb on - strand, within PS417_17455at 3813.621 kb on + strand, within PS417_17455at 3813.622 kb on - strand, within PS417_17455at 3813.964 kb on + strandat 3813.968 kb on - strandat 3813.990 kb on + strandat 3814.443 kb on - strand, within PS417_17460at 3814.508 kb on + strand, within PS417_17460at 3814.590 kb on - strand, within PS417_17460at 3814.818 kb on + strand, within PS417_17460at 3814.819 kb on - strand, within PS417_17460at 3815.003 kb on - strand, within PS417_17460at 3815.093 kb on + strand, within PS417_17460at 3815.483 kb on + strand, within PS417_17460at 3815.507 kb on + strand, within PS417_17460at 3815.507 kb on + strand, within PS417_17460at 3815.507 kb on + strand, within PS417_17460at 3815.508 kb on - strand, within PS417_17460at 3815.508 kb on - strand, within PS417_17460at 3815.577 kb on - strand, within PS417_17460at 3815.609 kb on + strand, within PS417_17460at 3815.609 kb on + strand, within PS417_17460at 3815.610 kb on - strand, within PS417_17460at 3815.610 kb on - strand, within PS417_17460at 3815.855 kb on + strandat 3815.855 kb on + strandat 3815.856 kb on - strandat 3815.856 kb on - strandat 3816.660 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,813,312 + -0.6
3,813,312 + -1.2
3,813,313 - +0.1
3,813,369 + -0.5
3,813,391 - +1.0
3,813,418 - -2.4
3,813,418 - -2.3
3,813,474 + PS417_17455 0.18 +0.3
3,813,474 + PS417_17455 0.18 +0.3
3,813,474 + PS417_17455 0.18 -1.3
3,813,475 - -0.7
3,813,475 - PS417_17455 0.19 -1.6
3,813,621 + PS417_17455 0.50 -2.0
3,813,622 - PS417_17455 0.50 +0.3
3,813,964 + -0.9
3,813,968 - -1.3
3,813,990 + +1.6
3,814,443 - PS417_17460 0.16 -1.5
3,814,508 + PS417_17460 0.19 -2.1
3,814,590 - PS417_17460 0.24 -2.0
3,814,818 + PS417_17460 0.36 -3.3
3,814,819 - PS417_17460 0.36 +0.6
3,815,003 - PS417_17460 0.46 -2.9
3,815,093 + PS417_17460 0.51 -2.0
3,815,483 + PS417_17460 0.72 +0.1
3,815,507 + PS417_17460 0.73 +0.7
3,815,507 + PS417_17460 0.73 -0.0
3,815,507 + PS417_17460 0.73 -2.5
3,815,508 - PS417_17460 0.73 -1.6
3,815,508 - PS417_17460 0.73 -0.1
3,815,577 - PS417_17460 0.77 -1.6
3,815,609 + PS417_17460 0.79 +0.5
3,815,609 + PS417_17460 0.79 -1.5
3,815,610 - PS417_17460 0.79 -0.2
3,815,610 - PS417_17460 0.79 -3.1
3,815,855 + -1.0
3,815,855 + -0.8
3,815,856 - -0.7
3,815,856 - +1.7
3,816,660 - +2.7

Or see this region's nucleotide sequence