Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17450 and PS417_17455 are separated by 3 nucleotides PS417_17455 and PS417_17460 are separated by 300 nucleotides PS417_17460 and PS417_17465 are separated by 78 nucleotides PS417_17465 and PS417_17470 are separated by 38 nucleotides
PS417_17450: PS417_17450 - amino acid ABC transporter substrate-binding protein, at 3,812,510 to 3,813,385
_17450
PS417_17455: PS417_17455 - cytochrome C, at 3,813,389 to 3,813,850
_17455
PS417_17460: PS417_17460 - Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data) , at 3,814,151 to 3,815,998
_17460
PS417_17465: PS417_17465 - hypothetical protein, at 3,816,077 to 3,816,724
_17465
PS417_17470: PS417_17470 - LuxR family transcriptional regulator, at 3,816,763 to 3,817,389
_17470
Position (kb)
3814
3815
3816 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3813.312 kb on + strand at 3813.312 kb on + strand at 3813.313 kb on - strand at 3813.369 kb on + strand at 3813.391 kb on - strand at 3813.418 kb on - strand at 3813.418 kb on - strand at 3813.474 kb on + strand, within PS417_17455 at 3813.474 kb on + strand, within PS417_17455 at 3813.474 kb on + strand, within PS417_17455 at 3813.475 kb on - strand at 3813.475 kb on - strand, within PS417_17455 at 3813.621 kb on + strand, within PS417_17455 at 3813.622 kb on - strand, within PS417_17455 at 3813.964 kb on + strand at 3813.968 kb on - strand at 3813.990 kb on + strand at 3814.443 kb on - strand, within PS417_17460 at 3814.508 kb on + strand, within PS417_17460 at 3814.590 kb on - strand, within PS417_17460 at 3814.818 kb on + strand, within PS417_17460 at 3814.819 kb on - strand, within PS417_17460 at 3815.003 kb on - strand, within PS417_17460 at 3815.093 kb on + strand, within PS417_17460 at 3815.483 kb on + strand, within PS417_17460 at 3815.507 kb on + strand, within PS417_17460 at 3815.507 kb on + strand, within PS417_17460 at 3815.507 kb on + strand, within PS417_17460 at 3815.508 kb on - strand, within PS417_17460 at 3815.508 kb on - strand, within PS417_17460 at 3815.577 kb on - strand, within PS417_17460 at 3815.609 kb on + strand, within PS417_17460 at 3815.609 kb on + strand, within PS417_17460 at 3815.610 kb on - strand, within PS417_17460 at 3815.610 kb on - strand, within PS417_17460 at 3815.855 kb on + strand at 3815.855 kb on + strand at 3815.856 kb on - strand at 3815.856 kb on - strand at 3816.660 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,813,312 + -0.6 3,813,312 + -1.2 3,813,313 - +0.1 3,813,369 + -0.5 3,813,391 - +1.0 3,813,418 - -2.4 3,813,418 - -2.3 3,813,474 + PS417_17455 0.18 +0.3 3,813,474 + PS417_17455 0.18 +0.3 3,813,474 + PS417_17455 0.18 -1.3 3,813,475 - -0.7 3,813,475 - PS417_17455 0.19 -1.6 3,813,621 + PS417_17455 0.50 -2.0 3,813,622 - PS417_17455 0.50 +0.3 3,813,964 + -0.9 3,813,968 - -1.3 3,813,990 + +1.6 3,814,443 - PS417_17460 0.16 -1.5 3,814,508 + PS417_17460 0.19 -2.1 3,814,590 - PS417_17460 0.24 -2.0 3,814,818 + PS417_17460 0.36 -3.3 3,814,819 - PS417_17460 0.36 +0.6 3,815,003 - PS417_17460 0.46 -2.9 3,815,093 + PS417_17460 0.51 -2.0 3,815,483 + PS417_17460 0.72 +0.1 3,815,507 + PS417_17460 0.73 +0.7 3,815,507 + PS417_17460 0.73 -0.0 3,815,507 + PS417_17460 0.73 -2.5 3,815,508 - PS417_17460 0.73 -1.6 3,815,508 - PS417_17460 0.73 -0.1 3,815,577 - PS417_17460 0.77 -1.6 3,815,609 + PS417_17460 0.79 +0.5 3,815,609 + PS417_17460 0.79 -1.5 3,815,610 - PS417_17460 0.79 -0.2 3,815,610 - PS417_17460 0.79 -3.1 3,815,855 + -1.0 3,815,855 + -0.8 3,815,856 - -0.7 3,815,856 - +1.7 3,816,660 - +2.7
Or see this region's nucleotide sequence