Strain Fitness in Pseudomonas simiae WCS417 around PS417_16010

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16005 and PS417_16010 are separated by 199 nucleotidesPS417_16010 and PS417_16015 are separated by 39 nucleotidesPS417_16015 and PS417_16020 are separated by 107 nucleotides PS417_16005: PS417_16005 - ATPase, at 3,507,908 to 3,509,212 _16005 PS417_16010: PS417_16010 - alkanesulfonate monooxygenase, at 3,509,412 to 3,510,494 _16010 PS417_16015: PS417_16015 - aldolase, at 3,510,534 to 3,511,328 _16015 PS417_16020: PS417_16020 - LysR family transcriptional regulator, at 3,511,436 to 3,512,341 _16020 Position (kb) 3509 3510 3511Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3508.676 kb on - strand, within PS417_16005at 3508.827 kb on - strand, within PS417_16005at 3509.002 kb on - strand, within PS417_16005at 3509.347 kb on + strandat 3509.347 kb on + strandat 3509.799 kb on - strand, within PS417_16010at 3509.808 kb on + strand, within PS417_16010at 3509.868 kb on + strand, within PS417_16010at 3509.868 kb on + strand, within PS417_16010at 3509.869 kb on - strand, within PS417_16010at 3509.869 kb on - strandat 3509.871 kb on + strand, within PS417_16010at 3509.872 kb on - strand, within PS417_16010at 3509.931 kb on + strand, within PS417_16010at 3509.988 kb on + strand, within PS417_16010at 3509.989 kb on - strand, within PS417_16010at 3510.360 kb on + strand, within PS417_16010at 3510.375 kb on - strand, within PS417_16010at 3510.525 kb on + strandat 3510.544 kb on + strandat 3510.759 kb on + strand, within PS417_16015at 3510.792 kb on - strand, within PS417_16015at 3510.881 kb on - strand, within PS417_16015at 3511.031 kb on - strand, within PS417_16015at 3511.039 kb on + strand, within PS417_16015at 3511.040 kb on - strand, within PS417_16015at 3511.192 kb on + strand, within PS417_16015at 3511.192 kb on + strand, within PS417_16015at 3511.193 kb on - strand, within PS417_16015at 3511.214 kb on - strand, within PS417_16015at 3511.352 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,508,676 - PS417_16005 0.59 +0.4
3,508,827 - PS417_16005 0.70 -2.8
3,509,002 - PS417_16005 0.84 -0.9
3,509,347 + -1.4
3,509,347 + +2.4
3,509,799 - PS417_16010 0.36 -2.1
3,509,808 + PS417_16010 0.37 +0.3
3,509,868 + PS417_16010 0.42 -3.7
3,509,868 + PS417_16010 0.42 -0.3
3,509,869 - PS417_16010 0.42 -0.1
3,509,869 - -0.6
3,509,871 + PS417_16010 0.42 -0.1
3,509,872 - PS417_16010 0.42 -1.0
3,509,931 + PS417_16010 0.48 +1.0
3,509,988 + PS417_16010 0.53 -1.0
3,509,989 - PS417_16010 0.53 +0.1
3,510,360 + PS417_16010 0.88 +0.1
3,510,375 - PS417_16010 0.89 -2.0
3,510,525 + -5.3
3,510,544 + -0.5
3,510,759 + PS417_16015 0.28 +0.9
3,510,792 - PS417_16015 0.32 -0.7
3,510,881 - PS417_16015 0.44 +1.9
3,511,031 - PS417_16015 0.63 -2.5
3,511,039 + PS417_16015 0.64 +0.3
3,511,040 - PS417_16015 0.64 +0.2
3,511,192 + PS417_16015 0.83 +0.5
3,511,192 + PS417_16015 0.83 +0.9
3,511,193 - PS417_16015 0.83 -2.3
3,511,214 - PS417_16015 0.86 -1.7
3,511,352 - -0.4

Or see this region's nucleotide sequence