Strain Fitness in Pseudomonas simiae WCS417 around PS417_15505

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15500 and PS417_15505 are separated by 134 nucleotidesPS417_15505 and PS417_15510 are separated by 55 nucleotidesPS417_15510 and PS417_15515 are separated by 90 nucleotidesPS417_15515 and PS417_15520 are separated by 23 nucleotides PS417_15500: PS417_15500 - membrane protein, at 3,395,563 to 3,396,330 _15500 PS417_15505: PS417_15505 - glutaminase, at 3,396,465 to 3,397,373 _15505 PS417_15510: PS417_15510 - hypothetical protein, at 3,397,429 to 3,397,773 _15510 PS417_15515: PS417_15515 - hypothetical protein, at 3,397,864 to 3,398,211 _15515 PS417_15520: PS417_15520 - hypothetical protein, at 3,398,235 to 3,398,645 _15520 Position (kb) 3396 3397 3398Strain fitness (log2 ratio) -3 -2 -1 0 1at 3395.539 kb on + strandat 3395.540 kb on - strandat 3395.617 kb on + strandat 3395.632 kb on + strandat 3395.632 kb on + strandat 3395.718 kb on + strand, within PS417_15500at 3395.774 kb on + strand, within PS417_15500at 3395.854 kb on + strand, within PS417_15500at 3395.854 kb on + strand, within PS417_15500at 3395.854 kb on + strand, within PS417_15500at 3395.855 kb on - strandat 3395.855 kb on - strand, within PS417_15500at 3395.855 kb on - strand, within PS417_15500at 3395.855 kb on - strand, within PS417_15500at 3396.104 kb on - strand, within PS417_15500at 3396.104 kb on - strand, within PS417_15500at 3396.106 kb on - strand, within PS417_15500at 3396.106 kb on - strand, within PS417_15500at 3396.183 kb on - strand, within PS417_15500at 3396.183 kb on - strand, within PS417_15500at 3396.226 kb on + strand, within PS417_15500at 3396.226 kb on + strand, within PS417_15500at 3396.226 kb on + strand, within PS417_15500at 3396.227 kb on - strand, within PS417_15500at 3396.342 kb on + strandat 3396.427 kb on + strandat 3396.428 kb on - strandat 3396.428 kb on - strandat 3396.569 kb on + strand, within PS417_15505at 3396.569 kb on + strand, within PS417_15505at 3396.662 kb on - strand, within PS417_15505at 3396.818 kb on - strand, within PS417_15505at 3396.818 kb on - strand, within PS417_15505at 3397.303 kb on + strandat 3397.303 kb on + strandat 3397.425 kb on + strandat 3397.425 kb on + strandat 3397.426 kb on - strandat 3397.502 kb on - strand, within PS417_15510at 3397.656 kb on + strand, within PS417_15510at 3397.751 kb on + strandat 3397.752 kb on - strandat 3397.752 kb on - strandat 3397.810 kb on + strandat 3398.227 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,395,539 + +0.7
3,395,540 - -1.3
3,395,617 + -1.4
3,395,632 + -0.8
3,395,632 + +1.3
3,395,718 + PS417_15500 0.20 -0.5
3,395,774 + PS417_15500 0.27 -0.3
3,395,854 + PS417_15500 0.38 +0.5
3,395,854 + PS417_15500 0.38 -1.1
3,395,854 + PS417_15500 0.38 +0.3
3,395,855 - +1.1
3,395,855 - PS417_15500 0.38 +1.3
3,395,855 - PS417_15500 0.38 +0.3
3,395,855 - PS417_15500 0.38 -1.6
3,396,104 - PS417_15500 0.70 -0.8
3,396,104 - PS417_15500 0.70 -2.4
3,396,106 - PS417_15500 0.71 -2.9
3,396,106 - PS417_15500 0.71 -1.0
3,396,183 - PS417_15500 0.81 +0.5
3,396,183 - PS417_15500 0.81 +0.1
3,396,226 + PS417_15500 0.86 +0.1
3,396,226 + PS417_15500 0.86 -3.1
3,396,226 + PS417_15500 0.86 -1.6
3,396,227 - PS417_15500 0.86 -0.7
3,396,342 + -3.1
3,396,427 + +1.4
3,396,428 - -1.2
3,396,428 - +0.0
3,396,569 + PS417_15505 0.11 +0.7
3,396,569 + PS417_15505 0.11 -0.0
3,396,662 - PS417_15505 0.22 +0.5
3,396,818 - PS417_15505 0.39 -1.0
3,396,818 - PS417_15505 0.39 +0.2
3,397,303 + +1.1
3,397,303 + -0.5
3,397,425 + +0.3
3,397,425 + -1.4
3,397,426 - +0.7
3,397,502 - PS417_15510 0.21 -0.1
3,397,656 + PS417_15510 0.66 -1.1
3,397,751 + -0.2
3,397,752 - +0.5
3,397,752 - -0.7
3,397,810 + -1.0
3,398,227 - +0.8

Or see this region's nucleotide sequence