Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15500 and PS417_15505 are separated by 134 nucleotides PS417_15505 and PS417_15510 are separated by 55 nucleotides PS417_15510 and PS417_15515 are separated by 90 nucleotides PS417_15515 and PS417_15520 are separated by 23 nucleotides
PS417_15500: PS417_15500 - membrane protein, at 3,395,563 to 3,396,330
_15500
PS417_15505: PS417_15505 - glutaminase, at 3,396,465 to 3,397,373
_15505
PS417_15510: PS417_15510 - hypothetical protein, at 3,397,429 to 3,397,773
_15510
PS417_15515: PS417_15515 - hypothetical protein, at 3,397,864 to 3,398,211
_15515
PS417_15520: PS417_15520 - hypothetical protein, at 3,398,235 to 3,398,645
_15520
Position (kb)
3396
3397
3398 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3395.539 kb on + strand at 3395.540 kb on - strand at 3395.617 kb on + strand at 3395.632 kb on + strand at 3395.632 kb on + strand at 3395.718 kb on + strand, within PS417_15500 at 3395.774 kb on + strand, within PS417_15500 at 3395.854 kb on + strand, within PS417_15500 at 3395.854 kb on + strand, within PS417_15500 at 3395.854 kb on + strand, within PS417_15500 at 3395.855 kb on - strand at 3395.855 kb on - strand, within PS417_15500 at 3395.855 kb on - strand, within PS417_15500 at 3395.855 kb on - strand, within PS417_15500 at 3396.104 kb on - strand, within PS417_15500 at 3396.104 kb on - strand, within PS417_15500 at 3396.106 kb on - strand, within PS417_15500 at 3396.106 kb on - strand, within PS417_15500 at 3396.183 kb on - strand, within PS417_15500 at 3396.183 kb on - strand, within PS417_15500 at 3396.226 kb on + strand, within PS417_15500 at 3396.226 kb on + strand, within PS417_15500 at 3396.226 kb on + strand, within PS417_15500 at 3396.227 kb on - strand, within PS417_15500 at 3396.342 kb on + strand at 3396.427 kb on + strand at 3396.428 kb on - strand at 3396.428 kb on - strand at 3396.569 kb on + strand, within PS417_15505 at 3396.569 kb on + strand, within PS417_15505 at 3396.662 kb on - strand, within PS417_15505 at 3396.818 kb on - strand, within PS417_15505 at 3396.818 kb on - strand, within PS417_15505 at 3397.303 kb on + strand at 3397.303 kb on + strand at 3397.425 kb on + strand at 3397.425 kb on + strand at 3397.426 kb on - strand at 3397.502 kb on - strand, within PS417_15510 at 3397.656 kb on + strand, within PS417_15510 at 3397.751 kb on + strand at 3397.752 kb on - strand at 3397.752 kb on - strand at 3397.810 kb on + strand at 3398.227 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,395,539 + +0.7 3,395,540 - -1.3 3,395,617 + -1.4 3,395,632 + -0.8 3,395,632 + +1.3 3,395,718 + PS417_15500 0.20 -0.5 3,395,774 + PS417_15500 0.27 -0.3 3,395,854 + PS417_15500 0.38 +0.5 3,395,854 + PS417_15500 0.38 -1.1 3,395,854 + PS417_15500 0.38 +0.3 3,395,855 - +1.1 3,395,855 - PS417_15500 0.38 +1.3 3,395,855 - PS417_15500 0.38 +0.3 3,395,855 - PS417_15500 0.38 -1.6 3,396,104 - PS417_15500 0.70 -0.8 3,396,104 - PS417_15500 0.70 -2.4 3,396,106 - PS417_15500 0.71 -2.9 3,396,106 - PS417_15500 0.71 -1.0 3,396,183 - PS417_15500 0.81 +0.5 3,396,183 - PS417_15500 0.81 +0.1 3,396,226 + PS417_15500 0.86 +0.1 3,396,226 + PS417_15500 0.86 -3.1 3,396,226 + PS417_15500 0.86 -1.6 3,396,227 - PS417_15500 0.86 -0.7 3,396,342 + -3.1 3,396,427 + +1.4 3,396,428 - -1.2 3,396,428 - +0.0 3,396,569 + PS417_15505 0.11 +0.7 3,396,569 + PS417_15505 0.11 -0.0 3,396,662 - PS417_15505 0.22 +0.5 3,396,818 - PS417_15505 0.39 -1.0 3,396,818 - PS417_15505 0.39 +0.2 3,397,303 + +1.1 3,397,303 + -0.5 3,397,425 + +0.3 3,397,425 + -1.4 3,397,426 - +0.7 3,397,502 - PS417_15510 0.21 -0.1 3,397,656 + PS417_15510 0.66 -1.1 3,397,751 + -0.2 3,397,752 - +0.5 3,397,752 - -0.7 3,397,810 + -1.0 3,398,227 - +0.8
Or see this region's nucleotide sequence