Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14640 and PS417_14645 are separated by 182 nucleotides PS417_14645 and PS417_14650 are separated by 162 nucleotides
PS417_14640: PS417_14640 - dihydrodipicolinate synthase, at 3,197,174 to 3,198,037
_14640
PS417_14645: PS417_14645 - hypothetical protein, at 3,198,220 to 3,200,418
_14645
PS417_14650: PS417_14650 - chemotaxis protein, at 3,200,581 to 3,202,146
_14650
Position (kb)
3198
3199
3200
3201 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3198.019 kb on - strand at 3198.019 kb on - strand at 3198.504 kb on - strand, within PS417_14645 at 3198.543 kb on - strand at 3198.753 kb on + strand, within PS417_14645 at 3198.855 kb on + strand, within PS417_14645 at 3198.857 kb on + strand, within PS417_14645 at 3198.858 kb on - strand, within PS417_14645 at 3198.858 kb on - strand, within PS417_14645 at 3199.194 kb on + strand, within PS417_14645 at 3199.194 kb on + strand, within PS417_14645 at 3199.449 kb on - strand, within PS417_14645 at 3199.450 kb on + strand, within PS417_14645 at 3199.450 kb on + strand, within PS417_14645 at 3199.607 kb on + strand, within PS417_14645 at 3199.968 kb on - strand, within PS417_14645 at 3200.328 kb on + strand at 3200.329 kb on - strand at 3200.461 kb on + strand at 3200.461 kb on + strand at 3200.674 kb on + strand at 3200.674 kb on + strand at 3201.046 kb on + strand, within PS417_14650 at 3201.046 kb on + strand, within PS417_14650 at 3201.046 kb on + strand, within PS417_14650 at 3201.232 kb on + strand, within PS417_14650 at 3201.233 kb on - strand, within PS417_14650 at 3201.233 kb on - strand, within PS417_14650 at 3201.233 kb on - strand, within PS417_14650 at 3201.233 kb on - strand, within PS417_14650
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,198,019 - +1.5 3,198,019 - +0.7 3,198,504 - PS417_14645 0.13 -0.5 3,198,543 - -0.7 3,198,753 + PS417_14645 0.24 -0.6 3,198,855 + PS417_14645 0.29 -1.5 3,198,857 + PS417_14645 0.29 +0.5 3,198,858 - PS417_14645 0.29 -2.6 3,198,858 - PS417_14645 0.29 -1.7 3,199,194 + PS417_14645 0.44 +0.4 3,199,194 + PS417_14645 0.44 -2.1 3,199,449 - PS417_14645 0.56 -0.8 3,199,450 + PS417_14645 0.56 -0.6 3,199,450 + PS417_14645 0.56 +1.5 3,199,607 + PS417_14645 0.63 -1.2 3,199,968 - PS417_14645 0.79 -1.6 3,200,328 + -1.1 3,200,329 - +2.0 3,200,461 + +1.9 3,200,461 + -1.2 3,200,674 + -3.3 3,200,674 + -2.1 3,201,046 + PS417_14650 0.30 -0.6 3,201,046 + PS417_14650 0.30 -0.3 3,201,046 + PS417_14650 0.30 +1.4 3,201,232 + PS417_14650 0.42 -1.0 3,201,233 - PS417_14650 0.42 -1.5 3,201,233 - PS417_14650 0.42 -0.7 3,201,233 - PS417_14650 0.42 -2.5 3,201,233 - PS417_14650 0.42 +1.6
Or see this region's nucleotide sequence