Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11030 and PS417_11035 are separated by 9 nucleotides PS417_11035 and PS417_11040 are separated by 53 nucleotides
PS417_11030: PS417_11030 - L-arabinose transporter ATP-binding protein, at 2,364,068 to 2,365,570
_11030
PS417_11035: PS417_11035 - arabinose ABC transporter permease, at 2,365,580 to 2,366,548
_11035
PS417_11040: PS417_11040 - aldose epimerase, at 2,366,602 to 2,367,750
_11040
Position (kb)
2365
2366
2367 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2364.653 kb on + strand, within PS417_11030 at 2364.653 kb on + strand, within PS417_11030 at 2364.654 kb on - strand, within PS417_11030 at 2364.654 kb on - strand, within PS417_11030 at 2364.806 kb on + strand, within PS417_11030 at 2364.806 kb on + strand, within PS417_11030 at 2364.807 kb on - strand, within PS417_11030 at 2364.807 kb on - strand, within PS417_11030 at 2365.081 kb on + strand, within PS417_11030 at 2365.130 kb on - strand, within PS417_11030 at 2365.130 kb on - strand, within PS417_11030 at 2365.257 kb on - strand, within PS417_11030 at 2365.377 kb on - strand, within PS417_11030 at 2365.580 kb on - strand at 2366.153 kb on + strand, within PS417_11035 at 2366.162 kb on + strand, within PS417_11035 at 2366.480 kb on + strand at 2366.486 kb on + strand at 2366.486 kb on + strand at 2366.568 kb on - strand at 2366.640 kb on - strand at 2366.739 kb on - strand, within PS417_11040 at 2367.128 kb on + strand, within PS417_11040 at 2367.128 kb on + strand, within PS417_11040 at 2367.129 kb on - strand, within PS417_11040 at 2367.273 kb on - strand, within PS417_11040 at 2367.273 kb on - strand, within PS417_11040 at 2367.273 kb on - strand, within PS417_11040 at 2367.325 kb on + strand, within PS417_11040 at 2367.325 kb on + strand, within PS417_11040
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,364,653 + PS417_11030 0.39 +0.3 2,364,653 + PS417_11030 0.39 +0.8 2,364,654 - PS417_11030 0.39 -0.3 2,364,654 - PS417_11030 0.39 -0.8 2,364,806 + PS417_11030 0.49 -2.6 2,364,806 + PS417_11030 0.49 -0.1 2,364,807 - PS417_11030 0.49 +1.0 2,364,807 - PS417_11030 0.49 -0.2 2,365,081 + PS417_11030 0.67 +1.3 2,365,130 - PS417_11030 0.71 -1.3 2,365,130 - PS417_11030 0.71 -1.0 2,365,257 - PS417_11030 0.79 +0.0 2,365,377 - PS417_11030 0.87 +0.6 2,365,580 - -1.1 2,366,153 + PS417_11035 0.59 +1.4 2,366,162 + PS417_11035 0.60 -0.5 2,366,480 + -1.5 2,366,486 + -1.3 2,366,486 + -0.2 2,366,568 - +1.9 2,366,640 - +1.0 2,366,739 - PS417_11040 0.12 +0.3 2,367,128 + PS417_11040 0.46 -0.5 2,367,128 + PS417_11040 0.46 +0.7 2,367,129 - PS417_11040 0.46 -2.7 2,367,273 - PS417_11040 0.58 +2.4 2,367,273 - PS417_11040 0.58 -1.1 2,367,273 - PS417_11040 0.58 -0.6 2,367,325 + PS417_11040 0.63 +1.8 2,367,325 + PS417_11040 0.63 +1.1
Or see this region's nucleotide sequence