Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10805 and PS417_10810 are separated by 157 nucleotides PS417_10810 and PS417_10815 are separated by 298 nucleotides PS417_10815 and PS417_10820 overlap by 4 nucleotides
PS417_10805: PS417_10805 - chemotaxis protein CheY, at 2,308,680 to 2,310,905
_10805
PS417_10810: PS417_10810 - hypothetical protein, at 2,311,063 to 2,311,332
_10810
PS417_10815: PS417_10815 - TetR family transcriptional regulator, at 2,311,631 to 2,312,302
_10815
PS417_10820: PS417_10820 - N-methylproline demethylase, at 2,312,299 to 2,314,335
_10820
Position (kb)
2311
2312
2313 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2310.926 kb on + strand at 2310.947 kb on + strand at 2311.005 kb on + strand at 2311.005 kb on + strand at 2311.107 kb on + strand, within PS417_10810 at 2311.107 kb on + strand at 2311.108 kb on - strand, within PS417_10810 at 2311.259 kb on + strand, within PS417_10810 at 2311.340 kb on - strand at 2311.457 kb on - strand at 2311.550 kb on + strand at 2311.550 kb on + strand at 2311.560 kb on + strand at 2311.560 kb on + strand at 2311.561 kb on - strand at 2311.592 kb on + strand at 2311.593 kb on - strand at 2311.904 kb on - strand, within PS417_10815 at 2312.120 kb on + strand, within PS417_10815 at 2312.120 kb on + strand, within PS417_10815 at 2312.121 kb on - strand, within PS417_10815 at 2312.140 kb on + strand, within PS417_10815 at 2312.331 kb on - strand at 2312.490 kb on - strand at 2312.490 kb on - strand at 2313.098 kb on - strand, within PS417_10820 at 2313.246 kb on + strand, within PS417_10820 at 2313.251 kb on + strand, within PS417_10820 at 2313.269 kb on + strand, within PS417_10820 at 2313.269 kb on + strand, within PS417_10820
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,310,926 + -0.0 2,310,947 + +1.2 2,311,005 + +0.1 2,311,005 + -2.5 2,311,107 + PS417_10810 0.16 +0.3 2,311,107 + -1.3 2,311,108 - PS417_10810 0.17 -3.3 2,311,259 + PS417_10810 0.73 -1.9 2,311,340 - +0.4 2,311,457 - -0.7 2,311,550 + -3.7 2,311,550 + -0.7 2,311,560 + -0.7 2,311,560 + +0.2 2,311,561 - -1.5 2,311,592 + +0.4 2,311,593 - -0.2 2,311,904 - PS417_10815 0.41 -0.3 2,312,120 + PS417_10815 0.73 -1.5 2,312,120 + PS417_10815 0.73 +1.1 2,312,121 - PS417_10815 0.73 +0.6 2,312,140 + PS417_10815 0.76 -3.0 2,312,331 - +0.0 2,312,490 - -1.8 2,312,490 - -2.5 2,313,098 - PS417_10820 0.39 -0.3 2,313,246 + PS417_10820 0.46 -2.6 2,313,251 + PS417_10820 0.47 -0.8 2,313,269 + PS417_10820 0.48 -1.4 2,313,269 + PS417_10820 0.48 +0.8
Or see this region's nucleotide sequence