Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08135 and PS417_08140 overlap by 4 nucleotides PS417_08140 and PS417_08145 are separated by 120 nucleotides PS417_08145 and PS417_08150 are separated by 162 nucleotides PS417_08150 and PS417_08155 are separated by 132 nucleotides PS417_08155 and PS417_08160 are separated by 20 nucleotides
PS417_08135: PS417_08135 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,781,308 to 1,783,518
_08135
PS417_08140: PS417_08140 - cytidylate kinase, at 1,783,515 to 1,784,204
_08140
PS417_08145: PS417_08145 - 30S ribosomal protein S1, at 1,784,325 to 1,786,010
_08145
PS417_08150: PS417_08150 - hypothetical protein, at 1,786,173 to 1,786,457
_08150
PS417_08155: PS417_08155 - integration host factor subunit beta, at 1,786,590 to 1,786,886
_08155
PS417_08160: PS417_08160 - hypothetical protein, at 1,786,907 to 1,787,137
_08160
Position (kb)
1784
1785
1786
1787 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1783.446 kb on + strand at 1783.467 kb on + strand at 1783.467 kb on + strand at 1784.206 kb on + strand at 1786.097 kb on + strand at 1786.098 kb on - strand at 1786.099 kb on + strand at 1786.099 kb on + strand at 1786.100 kb on - strand at 1786.100 kb on - strand at 1786.100 kb on - strand at 1786.120 kb on + strand at 1786.121 kb on - strand at 1786.122 kb on + strand at 1786.123 kb on - strand at 1786.162 kb on + strand at 1786.185 kb on - strand at 1786.189 kb on + strand at 1786.189 kb on + strand at 1786.190 kb on - strand at 1786.348 kb on - strand, within PS417_08150 at 1786.396 kb on - strand, within PS417_08150 at 1786.396 kb on - strand, within PS417_08150 at 1786.426 kb on + strand, within PS417_08150 at 1786.451 kb on + strand at 1786.452 kb on - strand at 1786.472 kb on + strand at 1786.474 kb on + strand at 1786.474 kb on + strand at 1786.474 kb on + strand at 1786.474 kb on + strand at 1786.501 kb on - strand at 1786.540 kb on + strand at 1786.664 kb on + strand, within PS417_08155 at 1786.673 kb on + strand, within PS417_08155 at 1786.674 kb on - strand, within PS417_08155 at 1786.906 kb on + strand at 1786.938 kb on + strand, within PS417_08160 at 1786.939 kb on - strand, within PS417_08160 at 1786.939 kb on - strand, within PS417_08160
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,783,446 + -0.3 1,783,467 + -0.9 1,783,467 + -0.7 1,784,206 + -0.4 1,786,097 + -0.2 1,786,098 - +0.4 1,786,099 + -2.4 1,786,099 + -0.1 1,786,100 - -1.9 1,786,100 - -3.4 1,786,100 - -1.1 1,786,120 + -1.2 1,786,121 - -0.3 1,786,122 + +1.5 1,786,123 - -0.4 1,786,162 + -2.9 1,786,185 - -0.1 1,786,189 + +1.9 1,786,189 + -0.4 1,786,190 - -0.5 1,786,348 - PS417_08150 0.61 -3.9 1,786,396 - PS417_08150 0.78 +1.1 1,786,396 - PS417_08150 0.78 -0.1 1,786,426 + PS417_08150 0.89 +2.5 1,786,451 + -0.5 1,786,452 - -1.5 1,786,472 + +1.5 1,786,474 + -2.6 1,786,474 + +1.3 1,786,474 + -3.8 1,786,474 + -0.5 1,786,501 - -1.6 1,786,540 + -1.2 1,786,664 + PS417_08155 0.25 +0.2 1,786,673 + PS417_08155 0.28 +0.9 1,786,674 - PS417_08155 0.28 -2.6 1,786,906 + -3.2 1,786,938 + PS417_08160 0.13 -0.3 1,786,939 - PS417_08160 0.14 -3.4 1,786,939 - PS417_08160 0.14 -0.6
Or see this region's nucleotide sequence