Strain Fitness in Pseudomonas simiae WCS417 around PS417_07885

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07875 and PS417_07885 are separated by 359 nucleotidesPS417_07885 and PS417_07890 overlap by 4 nucleotides PS417_07875: PS417_07875 - hypothetical protein, at 1,726,126 to 1,727,199 _07875 PS417_07885: PS417_07885 - hypothetical protein, at 1,727,559 to 1,728,437 _07885 PS417_07890: PS417_07890 - hypothetical protein, at 1,728,434 to 1,730,272 _07890 Position (kb) 1727 1728 1729Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1726.593 kb on - strand, within PS417_07875at 1727.413 kb on + strandat 1727.600 kb on + strandat 1727.706 kb on + strand, within PS417_07885at 1727.952 kb on + strand, within PS417_07885at 1728.156 kb on - strand, within PS417_07885at 1728.158 kb on + strand, within PS417_07885at 1728.159 kb on - strand, within PS417_07885at 1728.184 kb on + strand, within PS417_07885at 1728.185 kb on - strand, within PS417_07885at 1728.198 kb on - strand, within PS417_07885at 1728.617 kb on - strandat 1728.748 kb on + strand, within PS417_07890at 1728.816 kb on + strand, within PS417_07890at 1729.078 kb on + strand, within PS417_07890

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,726,593 - PS417_07875 0.43 +1.5
1,727,413 + +1.9
1,727,600 + +0.4
1,727,706 + PS417_07885 0.17 -1.5
1,727,952 + PS417_07885 0.45 -0.6
1,728,156 - PS417_07885 0.68 +0.2
1,728,158 + PS417_07885 0.68 +0.8
1,728,159 - PS417_07885 0.68 +0.2
1,728,184 + PS417_07885 0.71 -2.2
1,728,185 - PS417_07885 0.71 -4.6
1,728,198 - PS417_07885 0.73 -0.5
1,728,617 - -2.9
1,728,748 + PS417_07890 0.17 -3.5
1,728,816 + PS417_07890 0.21 -0.6
1,729,078 + PS417_07890 0.35 +0.9

Or see this region's nucleotide sequence