Strain Fitness in Pseudomonas simiae WCS417 around PS417_00555

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00545 and PS417_00550 are separated by 263 nucleotidesPS417_00550 and PS417_00555 are separated by 317 nucleotidesPS417_00555 and PS417_00560 are separated by 179 nucleotides PS417_00545: PS417_00545 - hypothetical protein, at 109,075 to 109,260 _00545 PS417_00550: PS417_00550 - hypothetical protein, at 109,524 to 109,739 _00550 PS417_00555: PS417_00555 - acetyl-CoA hydrolase, at 110,057 to 111,550 _00555 PS417_00560: PS417_00560 - NAD synthetase, at 111,730 to 113,166 _00560 Position (kb) 110 111 112Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 109.237 kb on - strand, within PS417_00545at 109.239 kb on - strand, within PS417_00545at 109.239 kb on - strand, within PS417_00545at 109.324 kb on + strandat 109.324 kb on + strandat 109.324 kb on + strandat 109.325 kb on - strandat 109.349 kb on + strandat 109.372 kb on + strandat 109.373 kb on - strandat 109.693 kb on - strand, within PS417_00550at 109.730 kb on + strandat 109.731 kb on - strandat 109.768 kb on + strandat 109.773 kb on - strandat 109.773 kb on - strandat 109.781 kb on - strandat 109.823 kb on + strandat 109.823 kb on + strandat 109.861 kb on + strandat 109.863 kb on + strandat 109.872 kb on + strandat 109.873 kb on - strandat 109.942 kb on + strandat 109.942 kb on + strandat 109.943 kb on - strandat 109.943 kb on - strandat 109.943 kb on - strandat 109.943 kb on - strandat 109.943 kb on - strandat 109.943 kb on - strandat 109.943 kb on - strandat 109.943 kb on - strandat 109.943 kb on - strandat 109.943 kb on - strandat 110.051 kb on + strandat 110.052 kb on - strandat 110.052 kb on - strandat 110.163 kb on + strandat 110.203 kb on + strandat 110.204 kb on - strandat 110.204 kb on - strandat 110.322 kb on - strand, within PS417_00555at 110.463 kb on + strand, within PS417_00555at 110.463 kb on + strand, within PS417_00555at 110.464 kb on - strand, within PS417_00555at 110.464 kb on - strand, within PS417_00555at 110.500 kb on + strand, within PS417_00555at 110.501 kb on - strand, within PS417_00555at 110.501 kb on - strand, within PS417_00555at 110.504 kb on + strand, within PS417_00555at 110.505 kb on - strand, within PS417_00555at 110.568 kb on + strand, within PS417_00555at 110.568 kb on + strand, within PS417_00555at 110.568 kb on + strand, within PS417_00555at 110.569 kb on - strand, within PS417_00555at 110.569 kb on - strand, within PS417_00555at 110.694 kb on + strand, within PS417_00555at 110.695 kb on - strand, within PS417_00555at 111.015 kb on + strand, within PS417_00555at 111.015 kb on + strand, within PS417_00555at 111.015 kb on + strand, within PS417_00555at 111.015 kb on + strand, within PS417_00555at 111.015 kb on + strand, within PS417_00555at 111.015 kb on + strand, within PS417_00555at 111.015 kb on + strand, within PS417_00555at 111.016 kb on - strand, within PS417_00555at 111.016 kb on - strand, within PS417_00555at 111.016 kb on - strand, within PS417_00555at 111.110 kb on + strand, within PS417_00555at 111.125 kb on + strand, within PS417_00555at 111.308 kb on + strand, within PS417_00555at 111.335 kb on + strand, within PS417_00555at 111.336 kb on - strand, within PS417_00555at 111.546 kb on + strandat 111.547 kb on - strandat 111.558 kb on + strandat 111.558 kb on + strandat 111.618 kb on - strandat 111.759 kb on + strandat 111.759 kb on + strandat 111.803 kb on + strandat 111.804 kb on - strandat 111.804 kb on - strandat 112.097 kb on + strand, within PS417_00560at 112.225 kb on - strand, within PS417_00560at 112.318 kb on + strand, within PS417_00560at 112.318 kb on + strand, within PS417_00560at 112.318 kb on + strand, within PS417_00560at 112.318 kb on + strand, within PS417_00560at 112.319 kb on - strand, within PS417_00560at 112.319 kb on - strand, within PS417_00560at 112.323 kb on + strand, within PS417_00560at 112.328 kb on + strand, within PS417_00560at 112.359 kb on - strand, within PS417_00560at 112.359 kb on - strand, within PS417_00560at 112.359 kb on - strand, within PS417_00560at 112.385 kb on - strand, within PS417_00560at 112.457 kb on + strand, within PS417_00560at 112.457 kb on + strand, within PS417_00560at 112.457 kb on + strand, within PS417_00560at 112.457 kb on + strand, within PS417_00560

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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109,237 - PS417_00545 0.87 -0.7
109,239 - PS417_00545 0.88 -1.0
109,239 - PS417_00545 0.88 -0.3
109,324 + -0.6
109,324 + +0.0
109,324 + -0.6
109,325 - +0.3
109,349 + -1.1
109,372 + +0.1
109,373 - +2.4
109,693 - PS417_00550 0.78 +0.9
109,730 + +0.8
109,731 - +3.0
109,768 + +2.0
109,773 - -0.1
109,773 - -0.9
109,781 - +0.9
109,823 + -0.3
109,823 + +0.1
109,861 + -1.8
109,863 + -0.2
109,872 + +1.0
109,873 - +2.5
109,942 + +0.3
109,942 + -1.1
109,943 - +2.1
109,943 - -0.7
109,943 - -2.1
109,943 - -1.2
109,943 - +1.0
109,943 - -1.3
109,943 - -1.9
109,943 - +0.7
109,943 - +1.2
109,943 - +0.7
110,051 + -0.2
110,052 - -1.5
110,052 - -2.3
110,163 + +0.7
110,203 + +0.2
110,204 - -2.5
110,204 - -1.0
110,322 - PS417_00555 0.18 -0.2
110,463 + PS417_00555 0.27 -0.1
110,463 + PS417_00555 0.27 -3.3
110,464 - PS417_00555 0.27 +0.5
110,464 - PS417_00555 0.27 -2.1
110,500 + PS417_00555 0.30 +0.4
110,501 - PS417_00555 0.30 +0.1
110,501 - PS417_00555 0.30 +1.5
110,504 + PS417_00555 0.30 +2.5
110,505 - PS417_00555 0.30 -1.2
110,568 + PS417_00555 0.34 -0.0
110,568 + PS417_00555 0.34 -1.1
110,568 + PS417_00555 0.34 -0.0
110,569 - PS417_00555 0.34 +0.7
110,569 - PS417_00555 0.34 -0.6
110,694 + PS417_00555 0.43 -0.1
110,695 - PS417_00555 0.43 +1.0
111,015 + PS417_00555 0.64 -1.9
111,015 + PS417_00555 0.64 +1.0
111,015 + PS417_00555 0.64 -1.3
111,015 + PS417_00555 0.64 -1.5
111,015 + PS417_00555 0.64 -0.8
111,015 + PS417_00555 0.64 +0.0
111,015 + PS417_00555 0.64 -2.3
111,016 - PS417_00555 0.64 +0.6
111,016 - PS417_00555 0.64 +0.2
111,016 - PS417_00555 0.64 +0.8
111,110 + PS417_00555 0.70 -1.5
111,125 + PS417_00555 0.71 -1.5
111,308 + PS417_00555 0.84 -0.5
111,335 + PS417_00555 0.86 -0.7
111,336 - PS417_00555 0.86 -3.9
111,546 + +0.8
111,547 - +0.1
111,558 + +1.7
111,558 + -0.1
111,618 - +0.1
111,759 + +0.3
111,759 + +1.1
111,803 + +2.1
111,804 - -1.7
111,804 - +0.2
112,097 + PS417_00560 0.26 +0.0
112,225 - PS417_00560 0.34 +0.9
112,318 + PS417_00560 0.41 +1.4
112,318 + PS417_00560 0.41 +3.4
112,318 + PS417_00560 0.41 -0.2
112,318 + PS417_00560 0.41 -2.0
112,319 - PS417_00560 0.41 -0.4
112,319 - PS417_00560 0.41 -1.6
112,323 + PS417_00560 0.41 -1.6
112,328 + PS417_00560 0.42 +0.4
112,359 - PS417_00560 0.44 -1.6
112,359 - PS417_00560 0.44 +0.2
112,359 - PS417_00560 0.44 -0.7
112,385 - PS417_00560 0.46 +1.6
112,457 + PS417_00560 0.51 +0.5
112,457 + PS417_00560 0.51 -1.9
112,457 + PS417_00560 0.51 -0.2
112,457 + PS417_00560 0.51 +0.0

Or see this region's nucleotide sequence