Strain Fitness in Pseudomonas simiae WCS417 around PS417_09125

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09120 and PS417_09125 are separated by 77 nucleotidesPS417_09125 and PS417_09130 are separated by 43 nucleotides PS417_09120: PS417_09120 - GntR family transcriptional regulator, at 1,980,442 to 1,981,923 _09120 PS417_09125: PS417_09125 - (Fe-S)-binding protein, at 1,982,001 to 1,983,662 _09125 PS417_09130: PS417_09130 - dipeptidase, at 1,983,706 to 1,985,445 _09130 Position (kb) 1982 1983 1984Strain fitness (log2 ratio) -2 -1 0 1 2at 1981.072 kb on + strand, within PS417_09120at 1981.073 kb on - strand, within PS417_09120at 1981.118 kb on + strand, within PS417_09120at 1981.118 kb on + strand, within PS417_09120at 1981.129 kb on + strand, within PS417_09120at 1981.305 kb on - strand, within PS417_09120at 1981.586 kb on + strandat 1981.731 kb on - strand, within PS417_09120at 1982.000 kb on + strandat 1982.006 kb on + strandat 1982.006 kb on + strandat 1982.007 kb on - strandat 1982.163 kb on + strandat 1982.163 kb on + strandat 1982.163 kb on + strandat 1982.163 kb on + strandat 1982.164 kb on - strandat 1982.703 kb on + strand, within PS417_09125at 1982.865 kb on + strand, within PS417_09125at 1982.866 kb on - strand, within PS417_09125at 1983.192 kb on + strand, within PS417_09125at 1983.193 kb on - strand, within PS417_09125at 1983.193 kb on - strand, within PS417_09125at 1983.193 kb on - strand, within PS417_09125at 1983.193 kb on - strand, within PS417_09125at 1983.193 kb on - strand, within PS417_09125at 1983.193 kb on - strand, within PS417_09125at 1983.326 kb on + strand, within PS417_09125at 1983.439 kb on - strand, within PS417_09125at 1983.642 kb on - strandat 1983.642 kb on - strandat 1983.643 kb on + strandat 1983.643 kb on + strandat 1983.643 kb on + strandat 1983.643 kb on + strandat 1983.643 kb on + strandat 1983.644 kb on - strandat 1983.644 kb on - strandat 1983.644 kb on - strandat 1983.690 kb on + strandat 1983.813 kb on - strandat 1983.813 kb on - strandat 1983.813 kb on - strandat 1984.203 kb on - strand, within PS417_09130at 1984.656 kb on - strand, within PS417_09130

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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1,981,072 + PS417_09120 0.43 +0.3
1,981,073 - PS417_09120 0.43 -0.2
1,981,118 + PS417_09120 0.46 +0.2
1,981,118 + PS417_09120 0.46 +0.8
1,981,129 + PS417_09120 0.46 -0.8
1,981,305 - PS417_09120 0.58 +0.4
1,981,586 + +1.4
1,981,731 - PS417_09120 0.87 -0.1
1,982,000 + +2.1
1,982,006 + -0.2
1,982,006 + -0.9
1,982,007 - +1.1
1,982,163 + -0.6
1,982,163 + -1.1
1,982,163 + +0.2
1,982,163 + +0.1
1,982,164 - -0.7
1,982,703 + PS417_09125 0.42 -1.3
1,982,865 + PS417_09125 0.52 +0.3
1,982,866 - PS417_09125 0.52 -0.4
1,983,192 + PS417_09125 0.72 -0.1
1,983,193 - PS417_09125 0.72 -1.7
1,983,193 - PS417_09125 0.72 -0.6
1,983,193 - PS417_09125 0.72 -1.8
1,983,193 - PS417_09125 0.72 -1.1
1,983,193 - PS417_09125 0.72 -1.0
1,983,193 - PS417_09125 0.72 -1.2
1,983,326 + PS417_09125 0.80 +0.9
1,983,439 - PS417_09125 0.87 -0.1
1,983,642 - +0.4
1,983,642 - +0.0
1,983,643 + -0.9
1,983,643 + -0.7
1,983,643 + +0.2
1,983,643 + +1.1
1,983,643 + +0.5
1,983,644 - +0.4
1,983,644 - +0.9
1,983,644 - +0.2
1,983,690 + -0.9
1,983,813 - -0.2
1,983,813 - +0.5
1,983,813 - +0.0
1,984,203 - PS417_09130 0.29 +0.8
1,984,656 - PS417_09130 0.55 -1.0

Or see this region's nucleotide sequence