Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02170 and PS417_02175 are separated by 227 nucleotides PS417_02175 and PS417_02180 are separated by 460 nucleotides
PS417_02170: PS417_02170 - acyl-CoA dehydrogenase, at 485,017 to 486,819
_02170
PS417_02175: PS417_02175 - transcriptional regulator, at 487,047 to 491,000
_02175
PS417_02180: PS417_02180 - proline:sodium symporter PutP, at 491,461 to 492,945
_02180
Position (kb) 487
488
489
490
491
492 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 486.257 kb on + strand, within PS417_02170 at 486.499 kb on + strand, within PS417_02170 at 486.773 kb on + strand at 486.774 kb on - strand at 486.827 kb on + strand at 486.828 kb on - strand at 487.095 kb on - strand at 487.431 kb on + strand at 487.431 kb on + strand at 487.432 kb on - strand at 487.798 kb on + strand, within PS417_02175 at 488.060 kb on - strand, within PS417_02175 at 488.991 kb on + strand, within PS417_02175 at 489.626 kb on - strand, within PS417_02175 at 489.760 kb on - strand, within PS417_02175 at 490.109 kb on - strand, within PS417_02175 at 491.272 kb on + strand at 491.385 kb on + strand at 491.385 kb on + strand at 491.386 kb on - strand at 491.430 kb on + strand at 491.431 kb on - strand at 491.461 kb on - strand at 491.461 kb on - strand at 491.469 kb on + strand at 491.470 kb on - strand at 491.470 kb on - strand at 491.473 kb on - strand at 491.473 kb on - strand at 491.665 kb on + strand, within PS417_02180 at 491.665 kb on + strand, within PS417_02180 at 491.665 kb on + strand, within PS417_02180 at 491.666 kb on - strand, within PS417_02180 at 491.719 kb on + strand, within PS417_02180 at 491.797 kb on + strand, within PS417_02180 at 491.980 kb on + strand, within PS417_02180
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 486,257 + PS417_02170 0.69 -0.5 486,499 + PS417_02170 0.82 +0.2 486,773 + +1.7 486,774 - -0.3 486,827 + +0.3 486,828 - -0.7 487,095 - -1.8 487,431 + -2.0 487,431 + -2.3 487,432 - -0.3 487,798 + PS417_02175 0.19 -2.5 488,060 - PS417_02175 0.26 -2.8 488,991 + PS417_02175 0.49 -3.8 489,626 - PS417_02175 0.65 -2.3 489,760 - PS417_02175 0.69 +1.1 490,109 - PS417_02175 0.77 -2.3 491,272 + -1.2 491,385 + -1.2 491,385 + -0.4 491,386 - -1.7 491,430 + -0.2 491,431 - -1.7 491,461 - -1.0 491,461 - -2.2 491,469 + -1.6 491,470 - -2.3 491,470 - -3.2 491,473 - +0.3 491,473 - -3.0 491,665 + PS417_02180 0.14 -0.8 491,665 + PS417_02180 0.14 +0.3 491,665 + PS417_02180 0.14 +0.4 491,666 - PS417_02180 0.14 -1.6 491,719 + PS417_02180 0.17 -0.1 491,797 + PS417_02180 0.23 +0.3 491,980 + PS417_02180 0.35 -2.1
Or see this region's nucleotide sequence