Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18555 and PS417_18560 are separated by 244 nucleotides PS417_18560 and PS417_18565 are separated by 64 nucleotides PS417_18565 and PS417_18570 are separated by 141 nucleotides
PS417_18555: PS417_18555 - acetyl-CoA carboxylase subunit beta, at 4,028,739 to 4,029,659
_18555
PS417_18560: PS417_18560 - N-(5'-phosphoribosyl)anthranilate isomerase, at 4,029,904 to 4,030,536
_18560
PS417_18565: PS417_18565 - pseudouridine synthase, at 4,030,601 to 4,031,425
_18565
PS417_18570: PS417_18570 - peptidoglycan-binding protein, at 4,031,567 to 4,034,128
_18570
Position (kb)
4030
4031
4032 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 4029.724 kb on - strand at 4029.865 kb on - strand at 4029.875 kb on - strand at 4029.955 kb on - strand at 4030.010 kb on + strand, within PS417_18560 at 4030.148 kb on + strand, within PS417_18560 at 4030.148 kb on + strand, within PS417_18560 at 4030.148 kb on + strand, within PS417_18560 at 4030.148 kb on + strand, within PS417_18560 at 4030.149 kb on - strand, within PS417_18560 at 4030.149 kb on - strand, within PS417_18560 at 4030.439 kb on + strand, within PS417_18560 at 4030.439 kb on + strand, within PS417_18560 at 4030.440 kb on - strand, within PS417_18560 at 4030.440 kb on - strand, within PS417_18560 at 4030.440 kb on - strand, within PS417_18560 at 4030.495 kb on + strand at 4030.826 kb on - strand, within PS417_18565 at 4031.441 kb on - strand at 4031.444 kb on + strand at 4031.444 kb on + strand at 4031.445 kb on - strand at 4031.445 kb on - strand at 4031.446 kb on + strand at 4031.679 kb on + strand at 4031.679 kb on + strand at 4031.680 kb on - strand at 4031.680 kb on - strand at 4031.680 kb on - strand at 4031.680 kb on - strand at 4032.258 kb on + strand, within PS417_18570
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,029,724 - +1.8 4,029,865 - -0.1 4,029,875 - +0.3 4,029,955 - -2.4 4,030,010 + PS417_18560 0.17 -3.5 4,030,148 + PS417_18560 0.39 -3.7 4,030,148 + PS417_18560 0.39 +2.0 4,030,148 + PS417_18560 0.39 -6.8 4,030,148 + PS417_18560 0.39 +1.0 4,030,149 - PS417_18560 0.39 -2.1 4,030,149 - PS417_18560 0.39 -5.5 4,030,439 + PS417_18560 0.85 -2.0 4,030,439 + PS417_18560 0.85 -3.5 4,030,440 - PS417_18560 0.85 -6.0 4,030,440 - PS417_18560 0.85 -3.0 4,030,440 - PS417_18560 0.85 -5.5 4,030,495 + -0.6 4,030,826 - PS417_18565 0.27 -0.8 4,031,441 - -0.3 4,031,444 + -3.7 4,031,444 + -3.1 4,031,445 - -1.1 4,031,445 - -0.6 4,031,446 + -1.5 4,031,679 + -2.3 4,031,679 + -1.7 4,031,680 - -4.0 4,031,680 - -2.0 4,031,680 - -2.9 4,031,680 - -0.6 4,032,258 + PS417_18570 0.27 -3.4
Or see this region's nucleotide sequence