Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01570 and PS417_01575 are separated by 39 nucleotides PS417_01575 and PS417_01580 are separated by 9 nucleotides PS417_01580 and PS417_01585 are separated by 66 nucleotides PS417_01585 and PS417_01590 are separated by 50 nucleotides
PS417_01570: PS417_01570 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 347,390 to 347,647
_01570
PS417_01575: PS417_01575 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) <small>(from data)</small>, at 347,687 to 348,424
_01575
PS417_01580: PS417_01580 - imidazole glycerol phosphate synthase, at 348,434 to 349,204
_01580
PS417_01585: PS417_01585 - amino acid ABC transporter substrate-binding protein, at 349,271 to 350,026
_01585
PS417_01590: PS417_01590 - polysaccharide deacetylase, at 350,077 to 350,850
_01590
Position (kb) 348
349
350 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 347.492 kb on - strand, within PS417_01570 at 347.558 kb on + strand, within PS417_01570 at 347.559 kb on - strand, within PS417_01570 at 347.730 kb on + strand at 347.806 kb on - strand, within PS417_01575 at 347.964 kb on - strand, within PS417_01575 at 347.985 kb on - strand, within PS417_01575 at 348.365 kb on + strand at 348.365 kb on + strand at 348.366 kb on - strand at 348.414 kb on - strand at 348.578 kb on - strand, within PS417_01580 at 348.578 kb on - strand, within PS417_01580 at 349.263 kb on + strand at 349.268 kb on + strand at 349.268 kb on + strand at 349.268 kb on + strand at 349.268 kb on + strand at 349.268 kb on + strand at 349.268 kb on + strand at 349.269 kb on - strand at 349.269 kb on - strand at 349.269 kb on - strand at 349.269 kb on - strand at 349.269 kb on - strand at 349.303 kb on + strand at 349.491 kb on - strand, within PS417_01585 at 349.526 kb on + strand, within PS417_01585 at 349.526 kb on + strand, within PS417_01585 at 349.527 kb on - strand, within PS417_01585 at 349.527 kb on - strand, within PS417_01585 at 349.709 kb on + strand, within PS417_01585 at 349.710 kb on - strand at 349.710 kb on - strand, within PS417_01585 at 349.753 kb on - strand, within PS417_01585 at 349.848 kb on - strand, within PS417_01585 at 349.914 kb on - strand, within PS417_01585 at 350.018 kb on + strand at 350.018 kb on + strand at 350.018 kb on + strand at 350.019 kb on - strand at 350.066 kb on - strand at 350.149 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 347,492 - PS417_01570 0.40 -3.8 347,558 + PS417_01570 0.65 -2.5 347,559 - PS417_01570 0.66 -4.5 347,730 + -3.2 347,806 - PS417_01575 0.16 -4.8 347,964 - PS417_01575 0.38 -6.5 347,985 - PS417_01575 0.40 -2.0 348,365 + -4.1 348,365 + -0.7 348,366 - -3.2 348,414 - -2.5 348,578 - PS417_01580 0.19 -3.9 348,578 - PS417_01580 0.19 -0.9 349,263 + -2.6 349,268 + +0.8 349,268 + +0.4 349,268 + -1.6 349,268 + -0.6 349,268 + +0.7 349,268 + +1.4 349,269 - -2.7 349,269 - +0.1 349,269 - +0.4 349,269 - -0.5 349,269 - +2.5 349,303 + -0.6 349,491 - PS417_01585 0.29 -0.2 349,526 + PS417_01585 0.34 -0.5 349,526 + PS417_01585 0.34 -1.2 349,527 - PS417_01585 0.34 -0.1 349,527 - PS417_01585 0.34 -1.3 349,709 + PS417_01585 0.58 -0.5 349,710 - -1.2 349,710 - PS417_01585 0.58 -0.4 349,753 - PS417_01585 0.64 -2.0 349,848 - PS417_01585 0.76 +0.7 349,914 - PS417_01585 0.85 +1.1 350,018 + -0.5 350,018 + -0.1 350,018 + -1.7 350,019 - -0.4 350,066 - +1.5 350,149 - -0.3
Or see this region's nucleotide sequence