Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01340 and PS417_01345 are separated by 233 nucleotides PS417_01345 and PS417_01350 are separated by 38 nucleotides
PS417_01340: PS417_01340 - agmatine deiminase, at 291,997 to 293,103
_01340
PS417_01345: PS417_01345 - hypothetical protein, at 293,337 to 293,555
_01345
PS417_01350: PS417_01350 - TonB-dependent receptor, at 293,594 to 295,681
_01350
Position (kb) 293
294 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 292.723 kb on + strand, within PS417_01340 at 292.723 kb on + strand, within PS417_01340 at 292.724 kb on - strand, within PS417_01340 at 292.798 kb on - strand, within PS417_01340 at 292.798 kb on - strand, within PS417_01340 at 292.822 kb on + strand, within PS417_01340 at 292.878 kb on + strand, within PS417_01340 at 292.879 kb on - strand, within PS417_01340 at 292.906 kb on + strand, within PS417_01340 at 292.907 kb on - strand, within PS417_01340 at 292.907 kb on - strand, within PS417_01340 at 293.114 kb on - strand at 293.211 kb on - strand at 293.231 kb on + strand at 293.232 kb on - strand at 293.289 kb on + strand at 293.300 kb on + strand at 293.301 kb on - strand at 293.553 kb on + strand at 293.576 kb on - strand at 293.604 kb on + strand at 293.604 kb on + strand at 293.604 kb on + strand at 293.604 kb on + strand at 293.605 kb on - strand at 293.676 kb on + strand at 293.676 kb on + strand at 293.761 kb on - strand at 293.885 kb on + strand, within PS417_01350 at 293.968 kb on - strand, within PS417_01350 at 293.968 kb on - strand, within PS417_01350 at 294.078 kb on + strand, within PS417_01350 at 294.079 kb on - strand, within PS417_01350 at 294.079 kb on - strand, within PS417_01350 at 294.261 kb on + strand, within PS417_01350 at 294.261 kb on + strand, within PS417_01350 at 294.261 kb on + strand, within PS417_01350 at 294.261 kb on + strand, within PS417_01350 at 294.262 kb on - strand, within PS417_01350 at 294.262 kb on - strand, within PS417_01350 at 294.438 kb on + strand, within PS417_01350 at 294.438 kb on + strand, within PS417_01350
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 292,723 + PS417_01340 0.66 -0.9 292,723 + PS417_01340 0.66 -1.3 292,724 - PS417_01340 0.66 -3.9 292,798 - PS417_01340 0.72 -0.2 292,798 - PS417_01340 0.72 -3.8 292,822 + PS417_01340 0.75 -0.3 292,878 + PS417_01340 0.80 -0.4 292,879 - PS417_01340 0.80 -0.4 292,906 + PS417_01340 0.82 -1.9 292,907 - PS417_01340 0.82 -1.5 292,907 - PS417_01340 0.82 +0.8 293,114 - +0.5 293,211 - -2.8 293,231 + +1.0 293,232 - -1.2 293,289 + -1.0 293,300 + +0.8 293,301 - -0.4 293,553 + -1.2 293,576 - -0.7 293,604 + -0.3 293,604 + +1.3 293,604 + -2.0 293,604 + -0.5 293,605 - -0.5 293,676 + +0.2 293,676 + -0.3 293,761 - +0.2 293,885 + PS417_01350 0.14 +0.8 293,968 - PS417_01350 0.18 -0.4 293,968 - PS417_01350 0.18 -2.6 294,078 + PS417_01350 0.23 +0.1 294,079 - PS417_01350 0.23 -2.9 294,079 - PS417_01350 0.23 +0.2 294,261 + PS417_01350 0.32 -1.1 294,261 + PS417_01350 0.32 +0.7 294,261 + PS417_01350 0.32 -0.2 294,261 + PS417_01350 0.32 -1.1 294,262 - PS417_01350 0.32 +1.8 294,262 - PS417_01350 0.32 -0.7 294,438 + PS417_01350 0.40 +0.1 294,438 + PS417_01350 0.40 -0.7
Or see this region's nucleotide sequence