Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06500 and PS417_06505 are separated by 119 nucleotides PS417_06505 and PS417_06510 are separated by 99 nucleotides
PS417_06500: PS417_06500 - hypothetical protein, at 1,439,862 to 1,440,620
_06500
PS417_06505: PS417_06505 - membrane protein, at 1,440,740 to 1,441,204
_06505
PS417_06510: PS417_06510 - ATP-dependent DNA helicase DinG, at 1,441,304 to 1,443,448
_06510
Position (kb) 1440
1441
1442 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1439.755 kb on + strand at 1439.867 kb on + strand at 1439.868 kb on - strand at 1439.868 kb on - strand at 1439.875 kb on + strand at 1439.875 kb on + strand at 1439.875 kb on + strand at 1439.875 kb on + strand at 1439.876 kb on - strand at 1439.876 kb on - strand at 1439.876 kb on - strand at 1439.876 kb on - strand at 1440.279 kb on + strand, within PS417_06500 at 1440.526 kb on - strand, within PS417_06500 at 1440.741 kb on + strand at 1440.741 kb on + strand at 1440.741 kb on + strand at 1440.741 kb on + strand at 1440.743 kb on + strand at 1440.927 kb on + strand, within PS417_06505 at 1440.927 kb on + strand, within PS417_06505 at 1440.928 kb on - strand, within PS417_06505 at 1440.951 kb on + strand, within PS417_06505 at 1441.170 kb on - strand at 1441.170 kb on - strand at 1441.170 kb on - strand at 1441.170 kb on - strand at 1441.182 kb on + strand at 1441.182 kb on + strand at 1441.182 kb on + strand at 1441.182 kb on + strand at 1441.300 kb on - strand at 1441.518 kb on - strand at 1441.682 kb on + strand, within PS417_06510 at 1441.682 kb on + strand, within PS417_06510 at 1441.683 kb on - strand, within PS417_06510 at 1441.683 kb on - strand, within PS417_06510 at 1441.708 kb on - strand, within PS417_06510 at 1441.959 kb on - strand, within PS417_06510 at 1441.959 kb on - strand, within PS417_06510 at 1442.050 kb on - strand, within PS417_06510 at 1442.075 kb on + strand, within PS417_06510 at 1442.075 kb on + strand, within PS417_06510 at 1442.075 kb on + strand, within PS417_06510 at 1442.076 kb on - strand, within PS417_06510 at 1442.076 kb on - strand, within PS417_06510
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,439,755 + -0.3 1,439,867 + -3.2 1,439,868 - -1.4 1,439,868 - -0.1 1,439,875 + -0.0 1,439,875 + -0.8 1,439,875 + +1.4 1,439,875 + -3.2 1,439,876 - +0.0 1,439,876 - -0.3 1,439,876 - +0.9 1,439,876 - -1.6 1,440,279 + PS417_06500 0.55 +1.0 1,440,526 - PS417_06500 0.87 +1.9 1,440,741 + -3.8 1,440,741 + -0.3 1,440,741 + +0.6 1,440,741 + -0.7 1,440,743 + -0.2 1,440,927 + PS417_06505 0.40 +0.9 1,440,927 + PS417_06505 0.40 -0.9 1,440,928 - PS417_06505 0.40 -0.4 1,440,951 + PS417_06505 0.45 +0.4 1,441,170 - -0.1 1,441,170 - -2.3 1,441,170 - -0.2 1,441,170 - -0.6 1,441,182 + -1.4 1,441,182 + -1.3 1,441,182 + +0.4 1,441,182 + -0.2 1,441,300 - -0.5 1,441,518 - -0.7 1,441,682 + PS417_06510 0.18 -0.9 1,441,682 + PS417_06510 0.18 -1.3 1,441,683 - PS417_06510 0.18 -0.4 1,441,683 - PS417_06510 0.18 +1.1 1,441,708 - PS417_06510 0.19 -0.7 1,441,959 - PS417_06510 0.31 -1.1 1,441,959 - PS417_06510 0.31 +0.8 1,442,050 - PS417_06510 0.35 -0.0 1,442,075 + PS417_06510 0.36 +1.1 1,442,075 + PS417_06510 0.36 -1.5 1,442,075 + PS417_06510 0.36 -1.6 1,442,076 - PS417_06510 0.36 +0.5 1,442,076 - PS417_06510 0.36 -1.0
Or see this region's nucleotide sequence