Strain Fitness in Pseudomonas simiae WCS417 around PS417_04910

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04905 and PS417_04910 are separated by 10 nucleotidesPS417_04910 and PS417_04915 are separated by 11 nucleotidesPS417_04915 and PS417_04920 are separated by 212 nucleotides PS417_04905: PS417_04905 - amino acid ABC transporter permease, at 1,092,877 to 1,094,058 _04905 PS417_04910: PS417_04910 - amino acid ABC transporter permease, at 1,094,069 to 1,095,166 _04910 PS417_04915: PS417_04915 - glutamine ABC transporter ATP-binding protein, at 1,095,178 to 1,095,942 _04915 PS417_04920: PS417_04920 - GntR family transcriptional regulator, at 1,096,155 to 1,096,814 _04920 Position (kb) 1094 1095 1096Strain fitness (log2 ratio) -3 -2 -1 0 1at 1093.115 kb on - strand, within PS417_04905at 1093.209 kb on - strand, within PS417_04905at 1093.255 kb on + strand, within PS417_04905at 1093.255 kb on + strand, within PS417_04905at 1093.256 kb on - strand, within PS417_04905at 1093.256 kb on - strandat 1093.687 kb on + strand, within PS417_04905at 1094.027 kb on - strandat 1094.027 kb on - strandat 1094.080 kb on + strandat 1094.081 kb on - strandat 1094.201 kb on + strand, within PS417_04910at 1094.330 kb on + strand, within PS417_04910at 1094.330 kb on + strand, within PS417_04910at 1094.331 kb on - strand, within PS417_04910at 1094.331 kb on - strand, within PS417_04910at 1094.411 kb on - strand, within PS417_04910at 1094.798 kb on + strand, within PS417_04910at 1094.798 kb on + strand, within PS417_04910at 1094.799 kb on - strand, within PS417_04910at 1095.068 kb on + strandat 1095.068 kb on + strandat 1095.119 kb on + strandat 1095.165 kb on - strandat 1095.303 kb on + strand, within PS417_04915at 1095.574 kb on + strand, within PS417_04915at 1095.983 kb on - strandat 1096.032 kb on - strandat 1096.063 kb on - strandat 1096.066 kb on + strandat 1096.066 kb on + strandat 1096.066 kb on + strandat 1096.066 kb on + strandat 1096.067 kb on - strandat 1096.067 kb on - strandat 1096.077 kb on - strandat 1096.092 kb on + strandat 1096.107 kb on - strandat 1096.129 kb on - strandat 1096.129 kb on - strandat 1096.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,093,115 - PS417_04905 0.20 -1.0
1,093,209 - PS417_04905 0.28 +0.1
1,093,255 + PS417_04905 0.32 +1.4
1,093,255 + PS417_04905 0.32 -0.5
1,093,256 - PS417_04905 0.32 -3.5
1,093,256 - +1.6
1,093,687 + PS417_04905 0.69 +0.0
1,094,027 - +1.1
1,094,027 - -0.0
1,094,080 + -0.3
1,094,081 - +0.2
1,094,201 + PS417_04910 0.12 +0.4
1,094,330 + PS417_04910 0.24 -2.3
1,094,330 + PS417_04910 0.24 -0.2
1,094,331 - PS417_04910 0.24 -0.3
1,094,331 - PS417_04910 0.24 -1.0
1,094,411 - PS417_04910 0.31 -1.7
1,094,798 + PS417_04910 0.66 -0.8
1,094,798 + PS417_04910 0.66 -0.7
1,094,799 - PS417_04910 0.66 -0.4
1,095,068 + -0.3
1,095,068 + -2.5
1,095,119 + -1.9
1,095,165 - -3.5
1,095,303 + PS417_04915 0.16 -0.7
1,095,574 + PS417_04915 0.52 +0.0
1,095,983 - +1.0
1,096,032 - +1.3
1,096,063 - +0.9
1,096,066 + -0.1
1,096,066 + +0.0
1,096,066 + -0.1
1,096,066 + +0.2
1,096,067 - -0.2
1,096,067 - -2.1
1,096,077 - -0.4
1,096,092 + +0.8
1,096,107 - +0.2
1,096,129 - +0.4
1,096,129 - -0.1
1,096,155 - +0.5

Or see this region's nucleotide sequence