Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04905 and PS417_04910 are separated by 10 nucleotides PS417_04910 and PS417_04915 are separated by 11 nucleotides PS417_04915 and PS417_04920 are separated by 212 nucleotides
PS417_04905: PS417_04905 - amino acid ABC transporter permease, at 1,092,877 to 1,094,058
_04905
PS417_04910: PS417_04910 - amino acid ABC transporter permease, at 1,094,069 to 1,095,166
_04910
PS417_04915: PS417_04915 - glutamine ABC transporter ATP-binding protein, at 1,095,178 to 1,095,942
_04915
PS417_04920: PS417_04920 - GntR family transcriptional regulator, at 1,096,155 to 1,096,814
_04920
Position (kb)
1094
1095
1096 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1093.115 kb on - strand, within PS417_04905 at 1093.209 kb on - strand, within PS417_04905 at 1093.255 kb on + strand, within PS417_04905 at 1093.255 kb on + strand, within PS417_04905 at 1093.256 kb on - strand, within PS417_04905 at 1093.256 kb on - strand at 1093.687 kb on + strand, within PS417_04905 at 1094.027 kb on - strand at 1094.027 kb on - strand at 1094.080 kb on + strand at 1094.081 kb on - strand at 1094.201 kb on + strand, within PS417_04910 at 1094.330 kb on + strand, within PS417_04910 at 1094.330 kb on + strand, within PS417_04910 at 1094.331 kb on - strand, within PS417_04910 at 1094.331 kb on - strand, within PS417_04910 at 1094.411 kb on - strand, within PS417_04910 at 1094.798 kb on + strand, within PS417_04910 at 1094.798 kb on + strand, within PS417_04910 at 1094.799 kb on - strand, within PS417_04910 at 1095.068 kb on + strand at 1095.068 kb on + strand at 1095.119 kb on + strand at 1095.165 kb on - strand at 1095.303 kb on + strand, within PS417_04915 at 1095.574 kb on + strand, within PS417_04915 at 1095.983 kb on - strand at 1096.032 kb on - strand at 1096.063 kb on - strand at 1096.066 kb on + strand at 1096.066 kb on + strand at 1096.066 kb on + strand at 1096.066 kb on + strand at 1096.067 kb on - strand at 1096.067 kb on - strand at 1096.077 kb on - strand at 1096.092 kb on + strand at 1096.107 kb on - strand at 1096.129 kb on - strand at 1096.129 kb on - strand at 1096.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,093,115 - PS417_04905 0.20 -1.0 1,093,209 - PS417_04905 0.28 +0.1 1,093,255 + PS417_04905 0.32 +1.4 1,093,255 + PS417_04905 0.32 -0.5 1,093,256 - PS417_04905 0.32 -3.5 1,093,256 - +1.6 1,093,687 + PS417_04905 0.69 +0.0 1,094,027 - +1.1 1,094,027 - -0.0 1,094,080 + -0.3 1,094,081 - +0.2 1,094,201 + PS417_04910 0.12 +0.4 1,094,330 + PS417_04910 0.24 -2.3 1,094,330 + PS417_04910 0.24 -0.2 1,094,331 - PS417_04910 0.24 -0.3 1,094,331 - PS417_04910 0.24 -1.0 1,094,411 - PS417_04910 0.31 -1.7 1,094,798 + PS417_04910 0.66 -0.8 1,094,798 + PS417_04910 0.66 -0.7 1,094,799 - PS417_04910 0.66 -0.4 1,095,068 + -0.3 1,095,068 + -2.5 1,095,119 + -1.9 1,095,165 - -3.5 1,095,303 + PS417_04915 0.16 -0.7 1,095,574 + PS417_04915 0.52 +0.0 1,095,983 - +1.0 1,096,032 - +1.3 1,096,063 - +0.9 1,096,066 + -0.1 1,096,066 + +0.0 1,096,066 + -0.1 1,096,066 + +0.2 1,096,067 - -0.2 1,096,067 - -2.1 1,096,077 - -0.4 1,096,092 + +0.8 1,096,107 - +0.2 1,096,129 - +0.4 1,096,129 - -0.1 1,096,155 - +0.5
Or see this region's nucleotide sequence