Strain Fitness in Pseudomonas simiae WCS417 around PS417_27570

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27560 and PS417_27565 overlap by 4 nucleotidesPS417_27565 and PS417_27570 are separated by 352 nucleotidesPS417_27570 and PS417_27580 are separated by 418 nucleotides PS417_27560: PS417_27560 - adenylate cyclase, at 5,944,796 to 5,947,636 _27560 PS417_27565: PS417_27565 - nucleoside diphosphate kinase regulator, at 5,947,633 to 5,948,046 _27565 PS417_27570: PS417_27570 - frataxin, at 5,948,399 to 5,948,731 _27570 PS417_27580: PS417_27580 - diaminopimelate decarboxylase, at 5,949,150 to 5,950,397 _27580 Position (kb) 5948 5949Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5947.399 kb on + strandat 5947.400 kb on - strandat 5947.400 kb on - strandat 5947.400 kb on - strandat 5947.409 kb on + strandat 5947.522 kb on - strandat 5947.578 kb on - strandat 5947.578 kb on - strandat 5948.321 kb on + strandat 5948.322 kb on - strandat 5948.352 kb on - strandat 5948.852 kb on + strandat 5948.853 kb on - strandat 5948.946 kb on + strandat 5949.132 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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5,947,399 + +0.2
5,947,400 - -0.1
5,947,400 - -1.3
5,947,400 - -0.0
5,947,409 + +0.2
5,947,522 - +2.2
5,947,578 - +0.5
5,947,578 - -0.2
5,948,321 + -2.9
5,948,322 - +0.6
5,948,352 - +1.4
5,948,852 + -0.6
5,948,853 - -0.2
5,948,946 + +1.4
5,949,132 + -0.7

Or see this region's nucleotide sequence