Strain Fitness in Pseudomonas simiae WCS417 around PS417_25880

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25875 and PS417_25880 are separated by 67 nucleotidesPS417_25880 and PS417_25885 are separated by 121 nucleotides PS417_25875: PS417_25875 - DNA primase, at 5,586,230 to 5,588,203 _25875 PS417_25880: PS417_25880 - RNA polymerase subunit sigma-70, at 5,588,271 to 5,590,121 _25880 PS417_25885: PS417_25885 - diguanylate cyclase, at 5,590,243 to 5,593,986 _25885 Position (kb) 5588 5589 5590 5591Strain fitness (log2 ratio) -2 -1 0 1at 5588.209 kb on + strandat 5590.161 kb on - strandat 5590.266 kb on - strandat 5590.266 kb on - strandat 5590.435 kb on + strandat 5590.576 kb on + strandat 5590.577 kb on - strandat 5590.577 kb on - strandat 5590.577 kb on - strandat 5590.667 kb on - strand, within PS417_25885at 5590.688 kb on + strand, within PS417_25885at 5590.696 kb on + strand, within PS417_25885at 5590.696 kb on + strand, within PS417_25885at 5590.864 kb on + strand, within PS417_25885at 5590.864 kb on + strand, within PS417_25885at 5590.865 kb on - strand, within PS417_25885at 5591.050 kb on + strand, within PS417_25885at 5591.051 kb on - strand, within PS417_25885at 5591.051 kb on - strand, within PS417_25885

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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5,588,209 + -0.8
5,590,161 - +0.7
5,590,266 - +0.1
5,590,266 - -0.8
5,590,435 + -2.2
5,590,576 + +1.5
5,590,577 - -0.3
5,590,577 - -0.4
5,590,577 - -1.3
5,590,667 - PS417_25885 0.11 +1.1
5,590,688 + PS417_25885 0.12 +0.2
5,590,696 + PS417_25885 0.12 +0.3
5,590,696 + PS417_25885 0.12 -0.8
5,590,864 + PS417_25885 0.17 -0.0
5,590,864 + PS417_25885 0.17 +0.1
5,590,865 - PS417_25885 0.17 -1.1
5,591,050 + PS417_25885 0.22 -0.8
5,591,051 - PS417_25885 0.22 -0.3
5,591,051 - PS417_25885 0.22 -0.0

Or see this region's nucleotide sequence