Strain Fitness in Pseudomonas simiae WCS417 around PS417_24725

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24720 and PS417_24725 overlap by 11 nucleotidesPS417_24725 and PS417_24730 are separated by 15 nucleotidesPS417_24730 and PS417_24735 are separated by 9 nucleotides PS417_24720: PS417_24720 - rod shape-determining protein RodA, at 5,363,073 to 5,364,218 _24720 PS417_24725: PS417_24725 - penicillin-binding protein 2, at 5,364,208 to 5,366,106 _24725 PS417_24730: PS417_24730 - 50S rRNA methyltransferase, at 5,366,122 to 5,366,589 _24730 PS417_24735: PS417_24735 - ribosome-associated protein IOJAP, at 5,366,599 to 5,367,093 _24735 Position (kb) 5364 5365 5366 5367Strain fitness (log2 ratio) -1 0 1at 5366.124 kb on - strandat 5366.133 kb on - strandat 5366.166 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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5,366,124 - +0.3
5,366,133 - +0.2
5,366,166 - +0.4

Or see this region's nucleotide sequence