Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24275 and PS417_24280 are separated by 241 nucleotides PS417_24280 and PS417_24285 are separated by 111 nucleotides
PS417_24275: PS417_24275 - diguanylate phosphodiesterase, at 5,265,968 to 5,269,819
_24275
PS417_24280: PS417_24280 - serine hydroxymethyltransferase, at 5,270,061 to 5,271,314
_24280
PS417_24285: PS417_24285 - GTP-binding protein, at 5,271,426 to 5,272,385
_24285
Position (kb) 5270
5271
5272 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5269.094 kb on + strand, within PS417_24275 at 5269.094 kb on + strand, within PS417_24275 at 5269.095 kb on - strand, within PS417_24275 at 5269.322 kb on - strand, within PS417_24275 at 5269.743 kb on - strand at 5269.995 kb on + strand at 5269.996 kb on - strand at 5269.996 kb on - strand at 5270.004 kb on + strand at 5270.004 kb on + strand at 5271.330 kb on + strand at 5271.361 kb on + strand at 5271.362 kb on - strand at 5271.551 kb on - strand, within PS417_24285 at 5271.786 kb on + strand, within PS417_24285 at 5271.786 kb on + strand, within PS417_24285 at 5271.786 kb on + strand, within PS417_24285 at 5271.787 kb on - strand, within PS417_24285 at 5271.787 kb on - strand, within PS417_24285 at 5271.787 kb on - strand, within PS417_24285 at 5272.021 kb on + strand, within PS417_24285 at 5272.021 kb on + strand, within PS417_24285 at 5272.022 kb on - strand, within PS417_24285 at 5272.151 kb on - strand, within PS417_24285
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,269,094 + PS417_24275 0.81 +0.3 5,269,094 + PS417_24275 0.81 +0.9 5,269,095 - PS417_24275 0.81 +0.3 5,269,322 - PS417_24275 0.87 -4.4 5,269,743 - -3.5 5,269,995 + +0.2 5,269,996 - -0.6 5,269,996 - -1.0 5,270,004 + -0.3 5,270,004 + -1.3 5,271,330 + -0.7 5,271,361 + +0.1 5,271,362 - -1.7 5,271,551 - PS417_24285 0.13 -0.3 5,271,786 + PS417_24285 0.38 -0.9 5,271,786 + PS417_24285 0.38 +1.0 5,271,786 + PS417_24285 0.38 -1.3 5,271,787 - PS417_24285 0.38 -0.8 5,271,787 - PS417_24285 0.38 +1.2 5,271,787 - PS417_24285 0.38 +0.1 5,272,021 + PS417_24285 0.62 -1.0 5,272,021 + PS417_24285 0.62 -1.7 5,272,022 - PS417_24285 0.62 -3.5 5,272,151 - PS417_24285 0.76 +0.1
Or see this region's nucleotide sequence