Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23045 and PS417_23050 are separated by 135 nucleotides PS417_23050 and PS417_23055 are separated by 238 nucleotides PS417_23055 and PS417_23060 are separated by 13 nucleotides
PS417_23045: PS417_23045 - Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) , at 4,994,486 to 4,996,132
_23045
PS417_23050: PS417_23050 - trehalose PTS system, EII-BC components TreB (from data) , at 4,996,268 to 4,997,710
_23050
PS417_23055: PS417_23055 - GntR family transcriptional regulator, at 4,997,949 to 4,998,653
_23055
PS417_23060: PS417_23060 - aminoglycoside phosphotransferase, at 4,998,667 to 4,999,437
_23060
Position (kb)
4996
4997
4998 Strain fitness (log2 ratio)
-2
-1
0
1 at 4995.465 kb on + strand, within PS417_23045 at 4995.936 kb on + strand, within PS417_23045 at 4996.024 kb on - strand at 4996.105 kb on - strand at 4996.105 kb on - strand at 4996.394 kb on - strand at 4996.750 kb on - strand, within PS417_23050 at 4996.966 kb on - strand, within PS417_23050 at 4997.002 kb on - strand, within PS417_23050 at 4997.043 kb on + strand, within PS417_23050 at 4997.697 kb on + strand at 4997.698 kb on - strand at 4997.785 kb on + strand at 4997.959 kb on - strand at 4997.959 kb on - strand at 4997.971 kb on - strand at 4998.426 kb on + strand, within PS417_23055 at 4998.426 kb on + strand, within PS417_23055 at 4998.595 kb on - strand at 4998.620 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,995,465 + PS417_23045 0.59 +0.0 4,995,936 + PS417_23045 0.88 -2.2 4,996,024 - -0.3 4,996,105 - +1.0 4,996,105 - +0.2 4,996,394 - -0.3 4,996,750 - PS417_23050 0.33 +0.3 4,996,966 - PS417_23050 0.48 -0.4 4,997,002 - PS417_23050 0.51 -1.5 4,997,043 + PS417_23050 0.54 -0.6 4,997,697 + -0.9 4,997,698 - +0.4 4,997,785 + +0.5 4,997,959 - -0.9 4,997,959 - -0.2 4,997,971 - -1.9 4,998,426 + PS417_23055 0.68 -0.8 4,998,426 + PS417_23055 0.68 +0.2 4,998,595 - +0.8 4,998,620 + -0.7
Or see this region's nucleotide sequence