Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02175 and PS417_02180 are separated by 460 nucleotides PS417_02180 and PS417_02185 are separated by 203 nucleotides
PS417_02175: PS417_02175 - transcriptional regulator, at 487,047 to 491,000
_02175
PS417_02180: PS417_02180 - proline:sodium symporter PutP, at 491,461 to 492,945
_02180
PS417_02185: PS417_02185 - type IV secretion protein Rhs, at 493,149 to 495,125
_02185
Position (kb) 491
492
493 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 491.272 kb on + strand at 491.385 kb on + strand at 491.385 kb on + strand at 491.386 kb on - strand at 491.430 kb on + strand at 491.431 kb on - strand at 491.461 kb on - strand at 491.461 kb on - strand at 491.469 kb on + strand at 491.470 kb on - strand at 491.470 kb on - strand at 491.473 kb on - strand at 491.473 kb on - strand at 491.665 kb on + strand, within PS417_02180 at 491.665 kb on + strand, within PS417_02180 at 491.665 kb on + strand, within PS417_02180 at 491.666 kb on - strand, within PS417_02180 at 491.719 kb on + strand, within PS417_02180 at 491.797 kb on + strand, within PS417_02180 at 491.980 kb on + strand, within PS417_02180 at 492.026 kb on + strand, within PS417_02180 at 492.343 kb on + strand, within PS417_02180 at 492.343 kb on + strand, within PS417_02180 at 492.343 kb on + strand, within PS417_02180 at 492.895 kb on - strand at 492.944 kb on - strand at 492.944 kb on - strand at 493.026 kb on - strand at 493.178 kb on + strand at 493.217 kb on - strand at 493.470 kb on - strand, within PS417_02185 at 493.470 kb on - strand, within PS417_02185 at 493.737 kb on + strand, within PS417_02185 at 493.738 kb on - strand, within PS417_02185 at 493.739 kb on + strand, within PS417_02185 at 493.799 kb on - strand, within PS417_02185 at 493.834 kb on - strand, within PS417_02185
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 491,272 + -0.1 491,385 + -1.3 491,385 + -0.3 491,386 - -2.8 491,430 + -2.6 491,431 - -2.0 491,461 - -1.5 491,461 - -1.4 491,469 + +1.1 491,470 - -3.0 491,470 - -3.4 491,473 - +0.2 491,473 - -0.8 491,665 + PS417_02180 0.14 -1.9 491,665 + PS417_02180 0.14 +0.2 491,665 + PS417_02180 0.14 -2.5 491,666 - PS417_02180 0.14 -0.2 491,719 + PS417_02180 0.17 -2.8 491,797 + PS417_02180 0.23 -1.4 491,980 + PS417_02180 0.35 -3.4 492,026 + PS417_02180 0.38 -1.9 492,343 + PS417_02180 0.59 -2.4 492,343 + PS417_02180 0.59 -0.9 492,343 + PS417_02180 0.59 -0.9 492,895 - -2.4 492,944 - -0.6 492,944 - -1.2 493,026 - +0.9 493,178 + -0.6 493,217 - -2.1 493,470 - PS417_02185 0.16 -2.2 493,470 - PS417_02185 0.16 +1.7 493,737 + PS417_02185 0.30 +0.0 493,738 - PS417_02185 0.30 +0.2 493,739 + PS417_02185 0.30 +0.4 493,799 - PS417_02185 0.33 -1.5 493,834 - PS417_02185 0.35 -0.9
Or see this region's nucleotide sequence