Strain Fitness in Pseudomonas simiae WCS417 around PS417_21285

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21280 and PS417_21285 overlap by 4 nucleotidesPS417_21285 and PS417_21290 are separated by 9 nucleotidesPS417_21290 and PS417_21295 are separated by 70 nucleotides PS417_21280: PS417_21280 - membrane protein, at 4,625,721 to 4,626,536 _21280 PS417_21285: PS417_21285 - hypothetical protein, at 4,626,533 to 4,626,895 _21285 PS417_21290: PS417_21290 - ABC transporter substrate-binding protein, at 4,626,905 to 4,627,720 _21290 PS417_21295: PS417_21295 - electron transfer flavoprotein subunit beta, at 4,627,791 to 4,628,720 _21295 Position (kb) 4626 4627Strain fitness (log2 ratio) -3 -2 -1 0 1at 4625.599 kb on + strandat 4625.599 kb on + strandat 4625.600 kb on - strandat 4625.669 kb on - strandat 4625.670 kb on + strandat 4625.671 kb on - strandat 4625.709 kb on + strandat 4625.709 kb on + strandat 4625.710 kb on - strandat 4625.710 kb on - strandat 4625.833 kb on + strand, within PS417_21280at 4625.834 kb on - strand, within PS417_21280at 4625.880 kb on + strand, within PS417_21280at 4625.881 kb on - strand, within PS417_21280at 4625.881 kb on - strand, within PS417_21280at 4625.943 kb on - strand, within PS417_21280at 4626.272 kb on - strand, within PS417_21280at 4626.286 kb on + strand, within PS417_21280at 4626.292 kb on + strandat 4626.293 kb on - strand, within PS417_21280at 4626.323 kb on - strand, within PS417_21280at 4626.590 kb on + strand, within PS417_21285at 4626.590 kb on + strand, within PS417_21285at 4626.591 kb on - strand, within PS417_21285at 4626.591 kb on - strand, within PS417_21285at 4627.075 kb on - strand, within PS417_21290at 4627.097 kb on + strand, within PS417_21290at 4627.098 kb on - strand, within PS417_21290at 4627.098 kb on - strand, within PS417_21290at 4627.176 kb on + strand, within PS417_21290at 4627.176 kb on + strand, within PS417_21290at 4627.176 kb on + strand, within PS417_21290at 4627.335 kb on + strand, within PS417_21290at 4627.371 kb on + strand, within PS417_21290at 4627.401 kb on + strand, within PS417_21290at 4627.402 kb on - strand, within PS417_21290at 4627.402 kb on - strand, within PS417_21290at 4627.402 kb on - strand, within PS417_21290at 4627.551 kb on - strand, within PS417_21290at 4627.551 kb on - strand, within PS417_21290at 4627.680 kb on - strandat 4627.773 kb on - strandat 4627.773 kb on - strandat 4627.775 kb on - strandat 4627.775 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,625,599 + +1.3
4,625,599 + -1.2
4,625,600 - +1.1
4,625,669 - +0.2
4,625,670 + -0.8
4,625,671 - -0.4
4,625,709 + -1.5
4,625,709 + +0.0
4,625,710 - -0.0
4,625,710 - +0.4
4,625,833 + PS417_21280 0.14 -3.0
4,625,834 - PS417_21280 0.14 -1.8
4,625,880 + PS417_21280 0.19 -0.1
4,625,881 - PS417_21280 0.20 +0.5
4,625,881 - PS417_21280 0.20 +0.4
4,625,943 - PS417_21280 0.27 +0.4
4,626,272 - PS417_21280 0.68 -0.3
4,626,286 + PS417_21280 0.69 -0.4
4,626,292 + -0.8
4,626,293 - PS417_21280 0.70 -1.5
4,626,323 - PS417_21280 0.74 -0.4
4,626,590 + PS417_21285 0.16 +0.5
4,626,590 + PS417_21285 0.16 +0.9
4,626,591 - PS417_21285 0.16 +1.1
4,626,591 - PS417_21285 0.16 +0.6
4,627,075 - PS417_21290 0.21 -0.1
4,627,097 + PS417_21290 0.24 +1.7
4,627,098 - PS417_21290 0.24 +0.4
4,627,098 - PS417_21290 0.24 -0.1
4,627,176 + PS417_21290 0.33 +0.7
4,627,176 + PS417_21290 0.33 -1.7
4,627,176 + PS417_21290 0.33 +0.1
4,627,335 + PS417_21290 0.53 -0.0
4,627,371 + PS417_21290 0.57 -1.8
4,627,401 + PS417_21290 0.61 -2.3
4,627,402 - PS417_21290 0.61 -0.1
4,627,402 - PS417_21290 0.61 -0.2
4,627,402 - PS417_21290 0.61 +0.2
4,627,551 - PS417_21290 0.79 +0.9
4,627,551 - PS417_21290 0.79 -0.7
4,627,680 - +0.1
4,627,773 - -0.4
4,627,773 - -2.4
4,627,775 - -3.2
4,627,775 - -2.4

Or see this region's nucleotide sequence