Strain Fitness in Pseudomonas simiae WCS417 around PS417_20845

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_20835 and PS417_20840 are separated by 56 nucleotidesPS417_20840 and PS417_20845 are separated by 1 nucleotidesPS417_20845 and PS417_20850 are separated by 157 nucleotides PS417_20835: PS417_20835 - LysR family transcriptional regulator, at 4,524,293 to 4,525,156 _20835 PS417_20840: PS417_20840 - hypothetical protein, at 4,525,213 to 4,525,803 _20840 PS417_20845: PS417_20845 - hypothetical protein, at 4,525,805 to 4,526,851 _20845 PS417_20850: PS417_20850 - hypothetical protein, at 4,527,009 to 4,528,970 _20850 Position (kb) 4525 4526 4527Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 4524.936 kb on - strand, within PS417_20835at 4524.936 kb on - strand, within PS417_20835at 4525.135 kb on - strandat 4525.135 kb on - strandat 4525.192 kb on - strandat 4525.192 kb on - strandat 4525.192 kb on - strandat 4525.192 kb on - strandat 4525.192 kb on - strandat 4525.200 kb on - strandat 4525.241 kb on + strandat 4525.355 kb on + strand, within PS417_20840at 4525.355 kb on + strand, within PS417_20840at 4525.356 kb on - strand, within PS417_20840at 4525.356 kb on - strand, within PS417_20840at 4525.365 kb on + strand, within PS417_20840at 4525.365 kb on + strand, within PS417_20840at 4525.398 kb on - strand, within PS417_20840at 4525.398 kb on - strand, within PS417_20840at 4525.620 kb on - strand, within PS417_20840at 4525.664 kb on + strand, within PS417_20840at 4525.664 kb on + strand, within PS417_20840at 4525.664 kb on + strand, within PS417_20840at 4525.715 kb on + strand, within PS417_20840at 4525.716 kb on - strandat 4525.789 kb on + strandat 4525.790 kb on - strandat 4525.790 kb on - strandat 4525.794 kb on - strandat 4525.854 kb on + strandat 4525.855 kb on - strandat 4525.855 kb on - strandat 4525.855 kb on - strandat 4525.878 kb on + strandat 4525.878 kb on + strandat 4525.879 kb on - strandat 4525.879 kb on - strandat 4525.879 kb on - strandat 4525.882 kb on + strandat 4525.882 kb on + strandat 4525.882 kb on + strandat 4525.883 kb on - strandat 4525.883 kb on - strandat 4525.883 kb on - strandat 4525.883 kb on - strandat 4525.883 kb on - strandat 4525.965 kb on - strand, within PS417_20845at 4525.965 kb on - strand, within PS417_20845at 4525.965 kb on - strand, within PS417_20845at 4526.188 kb on - strand, within PS417_20845at 4526.214 kb on + strand, within PS417_20845at 4526.214 kb on + strand, within PS417_20845at 4526.214 kb on + strand, within PS417_20845at 4526.215 kb on - strand, within PS417_20845at 4526.215 kb on - strand, within PS417_20845at 4526.230 kb on - strand, within PS417_20845at 4526.230 kb on - strand, within PS417_20845at 4526.230 kb on - strand, within PS417_20845at 4526.475 kb on + strand, within PS417_20845at 4526.608 kb on + strand, within PS417_20845at 4526.643 kb on + strandat 4526.643 kb on + strand, within PS417_20845at 4526.750 kb on + strandat 4526.750 kb on + strandat 4526.754 kb on + strandat 4526.822 kb on - strandat 4526.822 kb on - strandat 4526.822 kb on - strandat 4526.867 kb on + strandat 4526.867 kb on + strandat 4526.867 kb on + strandat 4526.868 kb on - strandat 4526.868 kb on - strandat 4526.868 kb on - strandat 4526.872 kb on - strandat 4526.943 kb on + strandat 4526.943 kb on + strandat 4526.944 kb on - strandat 4526.944 kb on - strandat 4526.944 kb on - strandat 4526.957 kb on + strandat 4526.957 kb on + strandat 4526.958 kb on - strandat 4526.958 kb on - strandat 4527.001 kb on + strandat 4527.006 kb on - strandat 4527.040 kb on + strandat 4527.074 kb on - strandat 4527.074 kb on - strandat 4527.083 kb on - strandat 4527.083 kb on - strandat 4527.115 kb on + strandat 4527.115 kb on + strandat 4527.115 kb on + strandat 4527.115 kb on + strandat 4527.115 kb on + strandat 4527.115 kb on + strandat 4527.115 kb on + strandat 4527.115 kb on + strandat 4527.116 kb on - strandat 4527.116 kb on - strandat 4527.344 kb on - strand, within PS417_20850at 4527.392 kb on - strand, within PS417_20850at 4527.392 kb on - strand, within PS417_20850at 4527.392 kb on - strand, within PS417_20850at 4527.427 kb on + strand, within PS417_20850at 4527.428 kb on - strand, within PS417_20850at 4527.730 kb on + strand, within PS417_20850at 4527.730 kb on + strand, within PS417_20850at 4527.731 kb on - strand, within PS417_20850

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
remove
4,524,936 - PS417_20835 0.74 -0.1
4,524,936 - PS417_20835 0.74 -0.6
4,525,135 - +0.8
4,525,135 - +0.1
4,525,192 - -0.6
4,525,192 - -0.2
4,525,192 - +0.2
4,525,192 - +0.2
4,525,192 - -2.2
4,525,200 - +0.5
4,525,241 + +0.3
4,525,355 + PS417_20840 0.24 +1.7
4,525,355 + PS417_20840 0.24 +0.6
4,525,356 - PS417_20840 0.24 +0.8
4,525,356 - PS417_20840 0.24 +1.1
4,525,365 + PS417_20840 0.26 +1.6
4,525,365 + PS417_20840 0.26 -0.3
4,525,398 - PS417_20840 0.31 -1.2
4,525,398 - PS417_20840 0.31 +0.5
4,525,620 - PS417_20840 0.69 +0.3
4,525,664 + PS417_20840 0.76 -0.6
4,525,664 + PS417_20840 0.76 +1.1
4,525,664 + PS417_20840 0.76 -0.9
4,525,715 + PS417_20840 0.85 +0.4
4,525,716 - +4.3
4,525,789 + +0.3
4,525,790 - -0.6
4,525,790 - -0.2
4,525,794 - +0.3
4,525,854 + -3.6
4,525,855 - -0.7
4,525,855 - -1.0
4,525,855 - +2.3
4,525,878 + -1.5
4,525,878 + +0.4
4,525,879 - -0.9
4,525,879 - +0.6
4,525,879 - +0.1
4,525,882 + -2.2
4,525,882 + +1.0
4,525,882 + -0.3
4,525,883 - -0.9
4,525,883 - -0.6
4,525,883 - -1.3
4,525,883 - -0.3
4,525,883 - +0.7
4,525,965 - PS417_20845 0.15 -0.2
4,525,965 - PS417_20845 0.15 -0.9
4,525,965 - PS417_20845 0.15 -0.1
4,526,188 - PS417_20845 0.37 +1.2
4,526,214 + PS417_20845 0.39 +0.1
4,526,214 + PS417_20845 0.39 -0.4
4,526,214 + PS417_20845 0.39 -1.0
4,526,215 - PS417_20845 0.39 +0.0
4,526,215 - PS417_20845 0.39 +0.8
4,526,230 - PS417_20845 0.41 +0.0
4,526,230 - PS417_20845 0.41 -0.9
4,526,230 - PS417_20845 0.41 +0.2
4,526,475 + PS417_20845 0.64 -0.3
4,526,608 + PS417_20845 0.77 -0.9
4,526,643 + -1.1
4,526,643 + PS417_20845 0.80 -0.1
4,526,750 + +0.1
4,526,750 + -0.1
4,526,754 + +2.7
4,526,822 - +0.2
4,526,822 - +0.2
4,526,822 - +0.2
4,526,867 + -2.3
4,526,867 + -0.1
4,526,867 + -0.8
4,526,868 - +0.0
4,526,868 - +0.5
4,526,868 - -0.9
4,526,872 - +1.4
4,526,943 + -0.5
4,526,943 + +0.3
4,526,944 - +0.0
4,526,944 - -1.9
4,526,944 - -0.2
4,526,957 + -0.2
4,526,957 + +0.4
4,526,958 - -2.5
4,526,958 - +0.9
4,527,001 + +0.2
4,527,006 - +1.1
4,527,040 + +0.2
4,527,074 - +0.5
4,527,074 - +0.0
4,527,083 - -1.1
4,527,083 - +1.4
4,527,115 + -0.2
4,527,115 + -0.9
4,527,115 + -0.3
4,527,115 + -0.9
4,527,115 + -0.2
4,527,115 + +0.9
4,527,115 + -0.3
4,527,115 + -0.5
4,527,116 - -1.0
4,527,116 - -0.1
4,527,344 - PS417_20850 0.17 -0.4
4,527,392 - PS417_20850 0.20 +0.5
4,527,392 - PS417_20850 0.20 +0.4
4,527,392 - PS417_20850 0.20 +1.5
4,527,427 + PS417_20850 0.21 -0.5
4,527,428 - PS417_20850 0.21 +0.7
4,527,730 + PS417_20850 0.37 -0.9
4,527,730 + PS417_20850 0.37 -4.8
4,527,731 - PS417_20850 0.37 -2.9

Or see this region's nucleotide sequence