Strain Fitness in Pseudomonas simiae WCS417 around PS417_11495

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11485 and PS417_11495 are separated by 293 nucleotidesPS417_11495 and PS417_11500 are separated by 9 nucleotides PS417_11485: PS417_11485 - AraC family transcriptional regulator, at 2,471,092 to 2,471,856 _11485 PS417_11495: PS417_11495 - oxidoreductase, at 2,472,150 to 2,473,109 _11495 PS417_11500: PS417_11500 - hypothetical protein, at 2,473,119 to 2,474,147 _11500 Position (kb) 2472 2473 2474Strain fitness (log2 ratio) -3 -2 -1 0 1at 2471.159 kb on - strandat 2471.173 kb on + strand, within PS417_11485at 2471.347 kb on + strand, within PS417_11485at 2471.347 kb on + strand, within PS417_11485at 2471.845 kb on + strandat 2471.910 kb on + strandat 2471.911 kb on - strandat 2472.441 kb on + strand, within PS417_11495at 2472.686 kb on - strand, within PS417_11495at 2472.873 kb on + strand, within PS417_11495at 2472.874 kb on - strand, within PS417_11495at 2472.874 kb on - strand, within PS417_11495at 2472.877 kb on + strandat 2472.877 kb on + strand, within PS417_11495at 2472.877 kb on + strand, within PS417_11495at 2472.877 kb on + strand, within PS417_11495at 2472.877 kb on + strand, within PS417_11495at 2472.877 kb on + strand, within PS417_11495at 2472.877 kb on + strand, within PS417_11495at 2472.877 kb on + strand, within PS417_11495at 2472.878 kb on - strand, within PS417_11495at 2472.942 kb on + strand, within PS417_11495at 2472.943 kb on - strand, within PS417_11495at 2473.060 kb on - strandat 2473.060 kb on - strandat 2473.060 kb on - strandat 2473.363 kb on + strand, within PS417_11500at 2473.363 kb on + strand, within PS417_11500at 2473.363 kb on + strand, within PS417_11500at 2473.364 kb on - strand, within PS417_11500at 2473.364 kb on - strand, within PS417_11500at 2473.364 kb on - strand, within PS417_11500at 2473.834 kb on + strand, within PS417_11500

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,471,159 - -0.7
2,471,173 + PS417_11485 0.11 +0.4
2,471,347 + PS417_11485 0.33 -1.0
2,471,347 + PS417_11485 0.33 -1.8
2,471,845 + -0.9
2,471,910 + -0.9
2,471,911 - -0.1
2,472,441 + PS417_11495 0.30 +0.7
2,472,686 - PS417_11495 0.56 +1.0
2,472,873 + PS417_11495 0.75 +0.1
2,472,874 - PS417_11495 0.75 -0.0
2,472,874 - PS417_11495 0.75 -0.2
2,472,877 + +1.1
2,472,877 + PS417_11495 0.76 -0.7
2,472,877 + PS417_11495 0.76 -1.3
2,472,877 + PS417_11495 0.76 -0.5
2,472,877 + PS417_11495 0.76 -1.1
2,472,877 + PS417_11495 0.76 -0.3
2,472,877 + PS417_11495 0.76 +0.3
2,472,877 + PS417_11495 0.76 -0.8
2,472,878 - PS417_11495 0.76 -2.0
2,472,942 + PS417_11495 0.82 -1.0
2,472,943 - PS417_11495 0.83 -0.5
2,473,060 - -0.9
2,473,060 - +0.1
2,473,060 - -0.1
2,473,363 + PS417_11500 0.24 +0.1
2,473,363 + PS417_11500 0.24 -0.6
2,473,363 + PS417_11500 0.24 +0.9
2,473,364 - PS417_11500 0.24 -1.0
2,473,364 - PS417_11500 0.24 -3.3
2,473,364 - PS417_11500 0.24 +0.1
2,473,834 + PS417_11500 0.69 +0.0

Or see this region's nucleotide sequence