Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08855 and PS417_08860 are separated by 193 nucleotides PS417_08860 and PS417_08865 overlap by 4 nucleotides
PS417_08855: PS417_08855 - glycine/betaine ABC transporter substrate-binding protein, at 1,926,185 to 1,927,036
_08855
PS417_08860: PS417_08860 - small component of pyruvate transporter (yjcH-like) (from data) , at 1,927,230 to 1,927,541
_08860
PS417_08865: PS417_08865 - large component of pyruvate transporter (actP-like) (from data) , at 1,927,538 to 1,929,196
_08865
Position (kb)
1927
1928 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1926.413 kb on - strand, within PS417_08855 at 1926.543 kb on - strand, within PS417_08855 at 1926.660 kb on - strand, within PS417_08855 at 1926.672 kb on - strand, within PS417_08855 at 1926.821 kb on + strand, within PS417_08855 at 1926.821 kb on + strand, within PS417_08855 at 1926.821 kb on + strand, within PS417_08855 at 1927.034 kb on + strand at 1927.129 kb on + strand at 1927.140 kb on + strand at 1927.141 kb on - strand at 1927.141 kb on - strand at 1927.143 kb on + strand at 1927.144 kb on - strand at 1927.144 kb on - strand at 1927.146 kb on + strand at 1927.146 kb on + strand at 1927.146 kb on + strand at 1927.147 kb on - strand at 1927.147 kb on - strand at 1927.147 kb on - strand at 1927.179 kb on - strand at 1927.179 kb on - strand at 1927.179 kb on - strand at 1927.179 kb on - strand at 1927.187 kb on + strand at 1927.245 kb on + strand at 1927.245 kb on + strand at 1927.473 kb on + strand, within PS417_08860 at 1927.473 kb on + strand, within PS417_08860 at 1927.473 kb on + strand, within PS417_08860 at 1927.473 kb on + strand, within PS417_08860 at 1927.473 kb on + strand, within PS417_08860 at 1927.474 kb on - strand, within PS417_08860 at 1927.474 kb on - strand, within PS417_08860 at 1927.474 kb on - strand, within PS417_08860 at 1927.474 kb on - strand at 1927.474 kb on - strand at 1927.474 kb on - strand, within PS417_08860 at 1927.474 kb on - strand, within PS417_08860 at 1927.694 kb on + strand at 1927.695 kb on - strand at 1927.695 kb on - strand at 1927.730 kb on + strand, within PS417_08865 at 1927.731 kb on - strand, within PS417_08865 at 1927.790 kb on + strand, within PS417_08865 at 1927.790 kb on + strand, within PS417_08865 at 1927.791 kb on - strand, within PS417_08865 at 1927.791 kb on - strand, within PS417_08865 at 1927.791 kb on - strand, within PS417_08865 at 1927.791 kb on - strand, within PS417_08865 at 1927.791 kb on - strand, within PS417_08865 at 1927.791 kb on - strand, within PS417_08865 at 1927.833 kb on - strand, within PS417_08865 at 1927.833 kb on - strand, within PS417_08865 at 1927.859 kb on + strand, within PS417_08865 at 1927.860 kb on - strand, within PS417_08865 at 1927.922 kb on - strand at 1927.934 kb on + strand, within PS417_08865 at 1927.934 kb on + strand at 1927.935 kb on - strand, within PS417_08865 at 1927.935 kb on - strand, within PS417_08865 at 1927.959 kb on - strand, within PS417_08865 at 1928.025 kb on - strand, within PS417_08865 at 1928.084 kb on + strand, within PS417_08865 at 1928.084 kb on + strand, within PS417_08865 at 1928.085 kb on - strand, within PS417_08865 at 1928.091 kb on + strand, within PS417_08865 at 1928.091 kb on + strand, within PS417_08865 at 1928.092 kb on - strand, within PS417_08865 at 1928.092 kb on - strand, within PS417_08865 at 1928.092 kb on - strand, within PS417_08865 at 1928.092 kb on - strand, within PS417_08865 at 1928.092 kb on - strand, within PS417_08865 at 1928.092 kb on - strand, within PS417_08865 at 1928.126 kb on + strand, within PS417_08865 at 1928.126 kb on + strand, within PS417_08865 at 1928.127 kb on - strand at 1928.127 kb on - strand, within PS417_08865 at 1928.127 kb on - strand, within PS417_08865 at 1928.468 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,926,413 - PS417_08855 0.27 -1.6 1,926,543 - PS417_08855 0.42 +0.6 1,926,660 - PS417_08855 0.56 -0.9 1,926,672 - PS417_08855 0.57 -1.3 1,926,821 + PS417_08855 0.75 -0.3 1,926,821 + PS417_08855 0.75 -0.0 1,926,821 + PS417_08855 0.75 +0.1 1,927,034 + -0.9 1,927,129 + -0.7 1,927,140 + +0.9 1,927,141 - -0.0 1,927,141 - +0.4 1,927,143 + +2.6 1,927,144 - +2.3 1,927,144 - -0.6 1,927,146 + +2.1 1,927,146 + +0.4 1,927,146 + +1.3 1,927,147 - +0.1 1,927,147 - -0.5 1,927,147 - -0.9 1,927,179 - -1.7 1,927,179 - -1.0 1,927,179 - +0.6 1,927,179 - +3.3 1,927,187 + +0.1 1,927,245 + +0.6 1,927,245 + +0.2 1,927,473 + PS417_08860 0.78 +1.0 1,927,473 + PS417_08860 0.78 -3.0 1,927,473 + PS417_08860 0.78 -1.9 1,927,473 + PS417_08860 0.78 -1.1 1,927,473 + PS417_08860 0.78 -1.8 1,927,474 - PS417_08860 0.78 -1.3 1,927,474 - PS417_08860 0.78 -2.6 1,927,474 - PS417_08860 0.78 -2.4 1,927,474 - +1.2 1,927,474 - +1.0 1,927,474 - PS417_08860 0.78 +0.8 1,927,474 - PS417_08860 0.78 -0.5 1,927,694 + +3.1 1,927,695 - -0.3 1,927,695 - +0.2 1,927,730 + PS417_08865 0.12 +2.6 1,927,731 - PS417_08865 0.12 -0.4 1,927,790 + PS417_08865 0.15 +0.3 1,927,790 + PS417_08865 0.15 -0.7 1,927,791 - PS417_08865 0.15 +0.1 1,927,791 - PS417_08865 0.15 +0.5 1,927,791 - PS417_08865 0.15 -0.9 1,927,791 - PS417_08865 0.15 -0.0 1,927,791 - PS417_08865 0.15 -0.2 1,927,791 - PS417_08865 0.15 -0.2 1,927,833 - PS417_08865 0.18 -0.5 1,927,833 - PS417_08865 0.18 +0.1 1,927,859 + PS417_08865 0.19 -0.4 1,927,860 - PS417_08865 0.19 -0.6 1,927,922 - -1.0 1,927,934 + PS417_08865 0.24 -1.2 1,927,934 + +1.7 1,927,935 - PS417_08865 0.24 +0.8 1,927,935 - PS417_08865 0.24 -0.3 1,927,959 - PS417_08865 0.25 -0.3 1,928,025 - PS417_08865 0.29 +2.2 1,928,084 + PS417_08865 0.33 -0.1 1,928,084 + PS417_08865 0.33 -0.8 1,928,085 - PS417_08865 0.33 +0.5 1,928,091 + PS417_08865 0.33 -1.9 1,928,091 + PS417_08865 0.33 +0.1 1,928,092 - PS417_08865 0.33 -0.7 1,928,092 - PS417_08865 0.33 +0.1 1,928,092 - PS417_08865 0.33 -1.9 1,928,092 - PS417_08865 0.33 -2.7 1,928,092 - PS417_08865 0.33 +0.2 1,928,092 - PS417_08865 0.33 -0.3 1,928,126 + PS417_08865 0.35 -0.3 1,928,126 + PS417_08865 0.35 +0.2 1,928,127 - +0.2 1,928,127 - PS417_08865 0.36 +1.0 1,928,127 - PS417_08865 0.36 -2.1 1,928,468 + -0.0
Or see this region's nucleotide sequence