Strain Fitness in Pseudomonas simiae WCS417 around PS417_08860

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08855 and PS417_08860 are separated by 193 nucleotidesPS417_08860 and PS417_08865 overlap by 4 nucleotides PS417_08855: PS417_08855 - glycine/betaine ABC transporter substrate-binding protein, at 1,926,185 to 1,927,036 _08855 PS417_08860: PS417_08860 - small component of pyruvate transporter (yjcH-like) (from data), at 1,927,230 to 1,927,541 _08860 PS417_08865: PS417_08865 - large component of pyruvate transporter (actP-like) (from data), at 1,927,538 to 1,929,196 _08865 Position (kb) 1927 1928Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1926.413 kb on - strand, within PS417_08855at 1926.543 kb on - strand, within PS417_08855at 1926.660 kb on - strand, within PS417_08855at 1926.672 kb on - strand, within PS417_08855at 1926.821 kb on + strand, within PS417_08855at 1926.821 kb on + strand, within PS417_08855at 1926.821 kb on + strand, within PS417_08855at 1927.034 kb on + strandat 1927.129 kb on + strandat 1927.140 kb on + strandat 1927.141 kb on - strandat 1927.141 kb on - strandat 1927.143 kb on + strandat 1927.144 kb on - strandat 1927.144 kb on - strandat 1927.146 kb on + strandat 1927.146 kb on + strandat 1927.146 kb on + strandat 1927.147 kb on - strandat 1927.147 kb on - strandat 1927.147 kb on - strandat 1927.179 kb on - strandat 1927.179 kb on - strandat 1927.179 kb on - strandat 1927.179 kb on - strandat 1927.187 kb on + strandat 1927.245 kb on + strandat 1927.245 kb on + strandat 1927.473 kb on + strand, within PS417_08860at 1927.473 kb on + strand, within PS417_08860at 1927.473 kb on + strand, within PS417_08860at 1927.473 kb on + strand, within PS417_08860at 1927.473 kb on + strand, within PS417_08860at 1927.474 kb on - strand, within PS417_08860at 1927.474 kb on - strand, within PS417_08860at 1927.474 kb on - strand, within PS417_08860at 1927.474 kb on - strandat 1927.474 kb on - strandat 1927.474 kb on - strand, within PS417_08860at 1927.474 kb on - strand, within PS417_08860at 1927.694 kb on + strandat 1927.695 kb on - strandat 1927.695 kb on - strandat 1927.730 kb on + strand, within PS417_08865at 1927.731 kb on - strand, within PS417_08865at 1927.790 kb on + strand, within PS417_08865at 1927.790 kb on + strand, within PS417_08865at 1927.791 kb on - strand, within PS417_08865at 1927.791 kb on - strand, within PS417_08865at 1927.791 kb on - strand, within PS417_08865at 1927.791 kb on - strand, within PS417_08865at 1927.791 kb on - strand, within PS417_08865at 1927.791 kb on - strand, within PS417_08865at 1927.833 kb on - strand, within PS417_08865at 1927.833 kb on - strand, within PS417_08865at 1927.859 kb on + strand, within PS417_08865at 1927.860 kb on - strand, within PS417_08865at 1927.922 kb on - strandat 1927.934 kb on + strand, within PS417_08865at 1927.934 kb on + strandat 1927.935 kb on - strand, within PS417_08865at 1927.935 kb on - strand, within PS417_08865at 1927.959 kb on - strand, within PS417_08865at 1928.025 kb on - strand, within PS417_08865at 1928.084 kb on + strand, within PS417_08865at 1928.084 kb on + strand, within PS417_08865at 1928.085 kb on - strand, within PS417_08865at 1928.091 kb on + strand, within PS417_08865at 1928.091 kb on + strand, within PS417_08865at 1928.092 kb on - strand, within PS417_08865at 1928.092 kb on - strand, within PS417_08865at 1928.092 kb on - strand, within PS417_08865at 1928.092 kb on - strand, within PS417_08865at 1928.092 kb on - strand, within PS417_08865at 1928.092 kb on - strand, within PS417_08865at 1928.126 kb on + strand, within PS417_08865at 1928.126 kb on + strand, within PS417_08865at 1928.127 kb on - strandat 1928.127 kb on - strand, within PS417_08865at 1928.127 kb on - strand, within PS417_08865at 1928.468 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,926,413 - PS417_08855 0.27 -1.6
1,926,543 - PS417_08855 0.42 +0.6
1,926,660 - PS417_08855 0.56 -0.9
1,926,672 - PS417_08855 0.57 -1.3
1,926,821 + PS417_08855 0.75 -0.3
1,926,821 + PS417_08855 0.75 -0.0
1,926,821 + PS417_08855 0.75 +0.1
1,927,034 + -0.9
1,927,129 + -0.7
1,927,140 + +0.9
1,927,141 - -0.0
1,927,141 - +0.4
1,927,143 + +2.6
1,927,144 - +2.3
1,927,144 - -0.6
1,927,146 + +2.1
1,927,146 + +0.4
1,927,146 + +1.3
1,927,147 - +0.1
1,927,147 - -0.5
1,927,147 - -0.9
1,927,179 - -1.7
1,927,179 - -1.0
1,927,179 - +0.6
1,927,179 - +3.3
1,927,187 + +0.1
1,927,245 + +0.6
1,927,245 + +0.2
1,927,473 + PS417_08860 0.78 +1.0
1,927,473 + PS417_08860 0.78 -3.0
1,927,473 + PS417_08860 0.78 -1.9
1,927,473 + PS417_08860 0.78 -1.1
1,927,473 + PS417_08860 0.78 -1.8
1,927,474 - PS417_08860 0.78 -1.3
1,927,474 - PS417_08860 0.78 -2.6
1,927,474 - PS417_08860 0.78 -2.4
1,927,474 - +1.2
1,927,474 - +1.0
1,927,474 - PS417_08860 0.78 +0.8
1,927,474 - PS417_08860 0.78 -0.5
1,927,694 + +3.1
1,927,695 - -0.3
1,927,695 - +0.2
1,927,730 + PS417_08865 0.12 +2.6
1,927,731 - PS417_08865 0.12 -0.4
1,927,790 + PS417_08865 0.15 +0.3
1,927,790 + PS417_08865 0.15 -0.7
1,927,791 - PS417_08865 0.15 +0.1
1,927,791 - PS417_08865 0.15 +0.5
1,927,791 - PS417_08865 0.15 -0.9
1,927,791 - PS417_08865 0.15 -0.0
1,927,791 - PS417_08865 0.15 -0.2
1,927,791 - PS417_08865 0.15 -0.2
1,927,833 - PS417_08865 0.18 -0.5
1,927,833 - PS417_08865 0.18 +0.1
1,927,859 + PS417_08865 0.19 -0.4
1,927,860 - PS417_08865 0.19 -0.6
1,927,922 - -1.0
1,927,934 + PS417_08865 0.24 -1.2
1,927,934 + +1.7
1,927,935 - PS417_08865 0.24 +0.8
1,927,935 - PS417_08865 0.24 -0.3
1,927,959 - PS417_08865 0.25 -0.3
1,928,025 - PS417_08865 0.29 +2.2
1,928,084 + PS417_08865 0.33 -0.1
1,928,084 + PS417_08865 0.33 -0.8
1,928,085 - PS417_08865 0.33 +0.5
1,928,091 + PS417_08865 0.33 -1.9
1,928,091 + PS417_08865 0.33 +0.1
1,928,092 - PS417_08865 0.33 -0.7
1,928,092 - PS417_08865 0.33 +0.1
1,928,092 - PS417_08865 0.33 -1.9
1,928,092 - PS417_08865 0.33 -2.7
1,928,092 - PS417_08865 0.33 +0.2
1,928,092 - PS417_08865 0.33 -0.3
1,928,126 + PS417_08865 0.35 -0.3
1,928,126 + PS417_08865 0.35 +0.2
1,928,127 - +0.2
1,928,127 - PS417_08865 0.36 +1.0
1,928,127 - PS417_08865 0.36 -2.1
1,928,468 + -0.0

Or see this region's nucleotide sequence