Strain Fitness in Pseudomonas putida KT2440 around PP_0140

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0138 and PP_0139 overlap by 19 nucleotidesPP_0139 and PP_0140 overlap by 4 nucleotidesPP_0140 and PP_0141 are separated by 3 nucleotidesPP_0141 and PP_0142 overlap by 4 nucleotides PP_0138: PP_0138 - conserved membrane protein of unknown function, at 146,243 to 147,472 _0138 PP_0139: PP_0139 - putative Lipoprotein, at 147,454 to 148,089 _0139 PP_0140: PP_0140 - conserved protein of unknown function, at 148,086 to 149,024 _0140 PP_0141: PP_0141 - putative ABC transporter, ATP-binding protein, at 149,028 to 149,819 _0141 PP_0142: PP_0142 - putative ABC transporter, permease protein, at 149,816 to 150,949 _0142 Position (kb) 148 149 150Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 147.170 kb on - strand, within PP_0138at 147.170 kb on - strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.344 kb on + strand, within PP_0138at 147.345 kb on - strand, within PP_0138at 147.345 kb on - strand, within PP_0138at 147.348 kb on + strand, within PP_0138at 147.348 kb on + strand, within PP_0138at 147.359 kb on + strandat 147.455 kb on + strandat 147.571 kb on + strand, within PP_0139at 147.571 kb on + strand, within PP_0139at 147.660 kb on - strand, within PP_0139at 147.734 kb on + strand, within PP_0139at 147.735 kb on - strand, within PP_0139at 147.735 kb on - strand, within PP_0139at 147.750 kb on + strand, within PP_0139at 147.750 kb on + strand, within PP_0139at 147.751 kb on - strand, within PP_0139at 147.751 kb on - strand, within PP_0139at 147.775 kb on + strandat 147.857 kb on + strand, within PP_0139at 147.858 kb on - strand, within PP_0139at 148.126 kb on + strandat 148.268 kb on + strand, within PP_0140at 148.269 kb on - strand, within PP_0140at 148.269 kb on - strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.515 kb on + strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.516 kb on - strand, within PP_0140at 148.656 kb on - strand, within PP_0140at 148.849 kb on + strand, within PP_0140at 148.849 kb on + strand, within PP_0140at 148.849 kb on + strand, within PP_0140at 148.906 kb on + strand, within PP_0140at 148.906 kb on + strand, within PP_0140at 148.907 kb on - strand, within PP_0140at 148.907 kb on - strand, within PP_0140at 148.995 kb on + strandat 148.995 kb on + strandat 149.092 kb on + strandat 149.093 kb on - strandat 149.194 kb on + strand, within PP_0141at 149.194 kb on + strand, within PP_0141at 149.194 kb on + strand, within PP_0141at 149.194 kb on + strand, within PP_0141at 149.195 kb on - strand, within PP_0141at 149.195 kb on - strand, within PP_0141at 149.195 kb on - strand, within PP_0141at 149.195 kb on - strand, within PP_0141at 149.256 kb on - strand, within PP_0141at 149.256 kb on - strand, within PP_0141at 149.704 kb on - strand, within PP_0141at 149.704 kb on - strand, within PP_0141at 149.800 kb on - strandat 150.002 kb on + strand, within PP_0142

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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147,170 - PP_0138 0.75 +0.8
147,170 - PP_0138 0.75 -3.8
147,344 + PP_0138 0.90 -0.1
147,344 + PP_0138 0.90 -0.6
147,344 + PP_0138 0.90 -1.3
147,344 + PP_0138 0.90 -0.6
147,344 + PP_0138 0.90 +2.0
147,344 + PP_0138 0.90 -0.4
147,345 - PP_0138 0.90 +1.1
147,345 - PP_0138 0.90 -1.1
147,348 + PP_0138 0.90 -1.6
147,348 + PP_0138 0.90 -4.1
147,359 + +0.6
147,455 + +1.0
147,571 + PP_0139 0.18 -0.3
147,571 + PP_0139 0.18 +1.6
147,660 - PP_0139 0.32 +2.2
147,734 + PP_0139 0.44 +0.0
147,735 - PP_0139 0.44 +1.6
147,735 - PP_0139 0.44 -3.3
147,750 + PP_0139 0.47 -0.5
147,750 + PP_0139 0.47 +0.3
147,751 - PP_0139 0.47 +0.2
147,751 - PP_0139 0.47 -2.9
147,775 + +0.2
147,857 + PP_0139 0.63 -0.1
147,858 - PP_0139 0.64 -1.6
148,126 + -1.2
148,268 + PP_0140 0.19 +0.7
148,269 - PP_0140 0.19 -2.3
148,269 - PP_0140 0.19 +1.5
148,515 + PP_0140 0.46 -2.6
148,515 + PP_0140 0.46 -0.8
148,515 + PP_0140 0.46 +1.4
148,515 + PP_0140 0.46 -3.0
148,515 + PP_0140 0.46 +0.2
148,515 + PP_0140 0.46 +0.6
148,515 + PP_0140 0.46 +1.4
148,515 + PP_0140 0.46 -2.1
148,515 + PP_0140 0.46 -2.6
148,515 + PP_0140 0.46 -3.5
148,516 - PP_0140 0.46 -3.6
148,516 - PP_0140 0.46 -1.5
148,516 - PP_0140 0.46 -1.0
148,516 - PP_0140 0.46 -2.3
148,516 - PP_0140 0.46 -2.2
148,516 - PP_0140 0.46 -2.4
148,516 - PP_0140 0.46 -2.9
148,516 - PP_0140 0.46 -0.9
148,656 - PP_0140 0.61 +0.5
148,849 + PP_0140 0.81 -0.5
148,849 + PP_0140 0.81 -3.2
148,849 + PP_0140 0.81 -0.2
148,906 + PP_0140 0.87 -3.0
148,906 + PP_0140 0.87 -2.9
148,907 - PP_0140 0.87 +0.2
148,907 - PP_0140 0.87 +1.6
148,995 + +0.1
148,995 + -3.0
149,092 + +1.2
149,093 - +0.2
149,194 + PP_0141 0.21 -3.6
149,194 + PP_0141 0.21 -3.4
149,194 + PP_0141 0.21 +1.1
149,194 + PP_0141 0.21 -2.8
149,195 - PP_0141 0.21 -2.7
149,195 - PP_0141 0.21 -3.3
149,195 - PP_0141 0.21 -3.4
149,195 - PP_0141 0.21 +2.6
149,256 - PP_0141 0.29 -2.3
149,256 - PP_0141 0.29 -0.4
149,704 - PP_0141 0.85 +1.3
149,704 - PP_0141 0.85 +1.0
149,800 - -0.8
150,002 + PP_0142 0.16 +1.3

Or see this region's nucleotide sequence