Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0556 and PP_0557 are separated by 283 nucleotides PP_0557 and PP_0558 are separated by 90 nucleotides
PP_0556: PP_0556 - Acetoin catabolism protein, at 645,039 to 646,094
_0556
PP_0557: PP_0557 - Acetoin catabolism regulatory protein, at 646,378 to 648,231
_0557
PP_0558: PP_0558 - acetyl-CoA carboxylase - biotin carboxylase subunit, at 648,322 to 649,677
_0558
Position (kb) 646
647
648
649 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 645.561 kb on + strand, within PP_0556 at 645.561 kb on + strand, within PP_0556 at 645.562 kb on - strand, within PP_0556 at 646.107 kb on - strand at 646.175 kb on + strand at 646.331 kb on - strand at 646.331 kb on - strand at 646.348 kb on - strand at 646.504 kb on + strand at 646.648 kb on + strand, within PP_0557 at 646.649 kb on - strand, within PP_0557 at 646.649 kb on - strand, within PP_0557 at 646.649 kb on - strand, within PP_0557 at 646.662 kb on + strand, within PP_0557 at 646.738 kb on + strand, within PP_0557 at 646.738 kb on + strand, within PP_0557 at 646.739 kb on - strand, within PP_0557 at 646.913 kb on + strand, within PP_0557 at 646.913 kb on + strand, within PP_0557 at 646.913 kb on + strand, within PP_0557 at 646.913 kb on + strand, within PP_0557 at 646.914 kb on - strand, within PP_0557 at 646.914 kb on - strand, within PP_0557 at 646.914 kb on - strand, within PP_0557 at 646.914 kb on - strand, within PP_0557 at 647.065 kb on + strand, within PP_0557 at 647.066 kb on - strand, within PP_0557 at 647.066 kb on - strand, within PP_0557 at 647.086 kb on + strand, within PP_0557 at 647.086 kb on + strand, within PP_0557 at 647.087 kb on - strand, within PP_0557 at 647.181 kb on + strand, within PP_0557 at 647.181 kb on + strand, within PP_0557 at 647.181 kb on + strand, within PP_0557 at 647.181 kb on + strand, within PP_0557 at 647.182 kb on - strand, within PP_0557 at 647.263 kb on + strand, within PP_0557 at 647.264 kb on - strand, within PP_0557 at 647.264 kb on - strand, within PP_0557 at 647.788 kb on + strand, within PP_0557 at 647.788 kb on + strand, within PP_0557 at 647.788 kb on + strand, within PP_0557 at 647.788 kb on + strand, within PP_0557 at 647.987 kb on - strand, within PP_0557 at 648.305 kb on + strand at 648.315 kb on + strand at 648.315 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 645,561 + PP_0556 0.49 -4.3 645,561 + PP_0556 0.49 +1.1 645,562 - PP_0556 0.50 +1.5 646,107 - +0.3 646,175 + -0.3 646,331 - -0.1 646,331 - -2.0 646,348 - +0.7 646,504 + -1.3 646,648 + PP_0557 0.15 -0.6 646,649 - PP_0557 0.15 -3.9 646,649 - PP_0557 0.15 +0.5 646,649 - PP_0557 0.15 -2.8 646,662 + PP_0557 0.15 +0.8 646,738 + PP_0557 0.19 -0.8 646,738 + PP_0557 0.19 -0.5 646,739 - PP_0557 0.19 +1.3 646,913 + PP_0557 0.29 +0.5 646,913 + PP_0557 0.29 +0.3 646,913 + PP_0557 0.29 -1.6 646,913 + PP_0557 0.29 -0.1 646,914 - PP_0557 0.29 -3.2 646,914 - PP_0557 0.29 -0.8 646,914 - PP_0557 0.29 -0.2 646,914 - PP_0557 0.29 +0.2 647,065 + PP_0557 0.37 +0.3 647,066 - PP_0557 0.37 +0.2 647,066 - PP_0557 0.37 -0.3 647,086 + PP_0557 0.38 +0.6 647,086 + PP_0557 0.38 +0.6 647,087 - PP_0557 0.38 +0.0 647,181 + PP_0557 0.43 -3.8 647,181 + PP_0557 0.43 -0.0 647,181 + PP_0557 0.43 -3.5 647,181 + PP_0557 0.43 +0.4 647,182 - PP_0557 0.43 -0.3 647,263 + PP_0557 0.48 -0.1 647,264 - PP_0557 0.48 -2.4 647,264 - PP_0557 0.48 -2.4 647,788 + PP_0557 0.76 +0.4 647,788 + PP_0557 0.76 -2.8 647,788 + PP_0557 0.76 +0.5 647,788 + PP_0557 0.76 -4.0 647,987 - PP_0557 0.87 -1.2 648,305 + +2.2 648,315 + +0.6 648,315 + +0.6
Or see this region's nucleotide sequence