Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0302 and PP_0303 are separated by 166 nucleotides PP_0303 and PP_0304 are separated by 123 nucleotides
PP_0302: PP_0302 - L-carnitine 3-dehydrogenase (EC 1.1.1.108) <small>(from data)</small>, at 362,517 to 363,482
_0302
PP_0303: PP_0303 - dehydrocarnitine cleavage enzyme, at 363,649 to 364,533
_0303
PP_0304: PP_0304 - Carnitine uptake ABC transporter, periplasmic component, at 364,657 to 365,601
_0304
Position (kb) 363
364
365 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 362.695 kb on + strand, within PP_0302 at 362.695 kb on + strand, within PP_0302 at 362.696 kb on - strand, within PP_0302 at 362.696 kb on - strand, within PP_0302 at 362.771 kb on + strand, within PP_0302 at 362.771 kb on + strand, within PP_0302 at 362.773 kb on + strand, within PP_0302 at 362.773 kb on + strand, within PP_0302 at 362.773 kb on + strand, within PP_0302 at 362.774 kb on - strand, within PP_0302 at 362.774 kb on - strand, within PP_0302 at 362.774 kb on - strand, within PP_0302 at 362.774 kb on - strand, within PP_0302 at 362.774 kb on - strand, within PP_0302 at 362.774 kb on - strand, within PP_0302 at 362.777 kb on + strand, within PP_0302 at 362.777 kb on + strand, within PP_0302 at 362.777 kb on + strand, within PP_0302 at 362.778 kb on - strand, within PP_0302 at 362.778 kb on - strand, within PP_0302 at 362.778 kb on - strand, within PP_0302 at 362.778 kb on - strand, within PP_0302 at 362.778 kb on - strand, within PP_0302 at 362.969 kb on - strand, within PP_0302 at 362.969 kb on - strand, within PP_0302 at 362.991 kb on - strand, within PP_0302 at 362.991 kb on - strand, within PP_0302 at 363.044 kb on - strand, within PP_0302 at 363.044 kb on - strand, within PP_0302 at 363.100 kb on + strand, within PP_0302 at 363.100 kb on + strand, within PP_0302 at 363.101 kb on - strand, within PP_0302 at 363.101 kb on - strand, within PP_0302 at 363.482 kb on + strand at 363.482 kb on + strand at 363.482 kb on + strand at 363.483 kb on - strand at 363.483 kb on - strand at 363.483 kb on - strand at 363.499 kb on - strand at 363.508 kb on + strand at 363.508 kb on + strand at 363.508 kb on + strand at 363.508 kb on + strand at 363.508 kb on + strand at 363.509 kb on - strand at 363.509 kb on - strand at 363.509 kb on - strand at 363.780 kb on - strand, within PP_0303 at 363.780 kb on - strand, within PP_0303 at 363.780 kb on - strand, within PP_0303 at 364.109 kb on + strand, within PP_0303 at 364.109 kb on + strand, within PP_0303 at 364.110 kb on - strand, within PP_0303 at 364.110 kb on - strand, within PP_0303 at 364.426 kb on + strand, within PP_0303 at 364.668 kb on + strand at 364.881 kb on - strand, within PP_0304 at 364.881 kb on - strand, within PP_0304 at 365.159 kb on + strand, within PP_0304 at 365.160 kb on - strand, within PP_0304 at 365.160 kb on - strand, within PP_0304 at 365.225 kb on + strand, within PP_0304 at 365.226 kb on - strand, within PP_0304 at 365.231 kb on + strand, within PP_0304 at 365.317 kb on - strand, within PP_0304 at 365.317 kb on - strand, within PP_0304 at 365.447 kb on - strand, within PP_0304 at 365.447 kb on - strand, within PP_0304
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 362,695 + PP_0302 0.18 +1.4 362,695 + PP_0302 0.18 -1.5 362,696 - PP_0302 0.19 +0.3 362,696 - PP_0302 0.19 -0.5 362,771 + PP_0302 0.26 +1.5 362,771 + PP_0302 0.26 +1.1 362,773 + PP_0302 0.27 +1.2 362,773 + PP_0302 0.27 +0.9 362,773 + PP_0302 0.27 -2.7 362,774 - PP_0302 0.27 -2.5 362,774 - PP_0302 0.27 +0.0 362,774 - PP_0302 0.27 +1.1 362,774 - PP_0302 0.27 +0.6 362,774 - PP_0302 0.27 +0.2 362,774 - PP_0302 0.27 -0.9 362,777 + PP_0302 0.27 -4.3 362,777 + PP_0302 0.27 -2.2 362,777 + PP_0302 0.27 -2.0 362,778 - PP_0302 0.27 -0.1 362,778 - PP_0302 0.27 -2.7 362,778 - PP_0302 0.27 +0.7 362,778 - PP_0302 0.27 -3.0 362,778 - PP_0302 0.27 -2.6 362,969 - PP_0302 0.47 -2.1 362,969 - PP_0302 0.47 +1.0 362,991 - PP_0302 0.49 -1.3 362,991 - PP_0302 0.49 -3.7 363,044 - PP_0302 0.55 +0.6 363,044 - PP_0302 0.55 -2.0 363,100 + PP_0302 0.60 +1.3 363,100 + PP_0302 0.60 +0.5 363,101 - PP_0302 0.60 -1.9 363,101 - PP_0302 0.60 +0.8 363,482 + -0.6 363,482 + +1.2 363,482 + -1.0 363,483 - +0.4 363,483 - +0.3 363,483 - -1.1 363,499 - -1.9 363,508 + +0.4 363,508 + +1.8 363,508 + +1.3 363,508 + -2.2 363,508 + +0.3 363,509 - -2.4 363,509 - -4.3 363,509 - -0.5 363,780 - PP_0303 0.15 -1.9 363,780 - PP_0303 0.15 +1.5 363,780 - PP_0303 0.15 -0.2 364,109 + PP_0303 0.52 +1.1 364,109 + PP_0303 0.52 +0.9 364,110 - PP_0303 0.52 -0.9 364,110 - PP_0303 0.52 +0.2 364,426 + PP_0303 0.88 -3.0 364,668 + +0.3 364,881 - PP_0304 0.24 -4.1 364,881 - PP_0304 0.24 +1.4 365,159 + PP_0304 0.53 +2.1 365,160 - PP_0304 0.53 -2.0 365,160 - PP_0304 0.53 +0.6 365,225 + PP_0304 0.60 -0.2 365,226 - PP_0304 0.60 -1.2 365,231 + PP_0304 0.61 -2.5 365,317 - PP_0304 0.70 +0.8 365,317 - PP_0304 0.70 +0.5 365,447 - PP_0304 0.84 -0.3 365,447 - PP_0304 0.84 +1.1
Or see this region's nucleotide sequence