Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_28050 and PS417_28055 are separated by 3 nucleotides PS417_28055 and PS417_28060 are separated by 145 nucleotides
PS417_28050: PS417_28050 - hypothetical protein, at 6,052,316 to 6,053,656
_28050
PS417_28055: PS417_28055 - peptidase, at 6,053,660 to 6,054,322
_28055
PS417_28060: PS417_28060 - chemotaxis protein CheY, at 6,054,468 to 6,055,373
_28060
Position (kb)
6053
6054
6055 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6052.694 kb on + strand, within PS417_28050 at 6052.785 kb on - strand, within PS417_28050 at 6052.896 kb on - strand, within PS417_28050 at 6052.896 kb on - strand, within PS417_28050 at 6053.051 kb on - strand, within PS417_28050 at 6053.114 kb on + strand, within PS417_28050 at 6053.640 kb on + strand at 6053.871 kb on + strand, within PS417_28055 at 6053.996 kb on - strand, within PS417_28055 at 6053.996 kb on - strand, within PS417_28055 at 6054.043 kb on + strand, within PS417_28055 at 6054.044 kb on - strand, within PS417_28055 at 6054.044 kb on - strand, within PS417_28055 at 6054.153 kb on - strand, within PS417_28055 at 6054.205 kb on + strand, within PS417_28055 at 6054.205 kb on + strand, within PS417_28055 at 6054.252 kb on + strand, within PS417_28055 at 6054.526 kb on + strand at 6054.526 kb on + strand at 6054.526 kb on + strand at 6054.527 kb on - strand at 6054.527 kb on - strand at 6055.297 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 6,052,694 + PS417_28050 0.28 -0.9 6,052,785 - PS417_28050 0.35 -2.6 6,052,896 - PS417_28050 0.43 -0.7 6,052,896 - PS417_28050 0.43 -3.5 6,053,051 - PS417_28050 0.55 -1.0 6,053,114 + PS417_28050 0.60 -0.6 6,053,640 + +0.3 6,053,871 + PS417_28055 0.32 +0.7 6,053,996 - PS417_28055 0.51 -0.2 6,053,996 - PS417_28055 0.51 -0.8 6,054,043 + PS417_28055 0.58 -0.1 6,054,044 - PS417_28055 0.58 -2.4 6,054,044 - PS417_28055 0.58 -0.3 6,054,153 - PS417_28055 0.74 -0.5 6,054,205 + PS417_28055 0.82 -0.5 6,054,205 + PS417_28055 0.82 +0.1 6,054,252 + PS417_28055 0.89 -1.6 6,054,526 + +2.4 6,054,526 + +0.4 6,054,526 + +1.2 6,054,527 - +0.4 6,054,527 - +1.6 6,055,297 + -1.4
Or see this region's nucleotide sequence