Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27945 and PS417_27950 are separated by 54 nucleotides PS417_27950 and PS417_27955 are separated by 2 nucleotides
PS417_27945: PS417_27945 - type VI secretion protein ImpA, at 6,028,446 to 6,029,465
_27945
PS417_27950: PS417_27950 - hypothetical protein, at 6,029,520 to 6,030,026
_27950
PS417_27955: PS417_27955 - EvpB family type VI secretion protein, at 6,030,029 to 6,031,525
_27955
Position (kb)
6029
6030
6031 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 6029.314 kb on - strand, within PS417_27945 at 6029.314 kb on - strand, within PS417_27945 at 6029.584 kb on - strand, within PS417_27950 at 6029.599 kb on - strand, within PS417_27950 at 6029.919 kb on + strand, within PS417_27950 at 6029.919 kb on + strand, within PS417_27950 at 6029.920 kb on - strand, within PS417_27950 at 6029.920 kb on - strand, within PS417_27950 at 6030.040 kb on + strand at 6030.335 kb on + strand, within PS417_27955 at 6030.335 kb on + strand, within PS417_27955 at 6030.336 kb on - strand, within PS417_27955 at 6030.471 kb on - strand, within PS417_27955 at 6030.471 kb on - strand, within PS417_27955 at 6030.483 kb on - strand, within PS417_27955 at 6030.527 kb on + strand, within PS417_27955 at 6030.527 kb on + strand, within PS417_27955 at 6030.702 kb on - strand, within PS417_27955 at 6030.857 kb on + strand, within PS417_27955 at 6030.858 kb on - strand, within PS417_27955 at 6030.858 kb on - strand, within PS417_27955
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 6,029,314 - PS417_27945 0.85 +3.1 6,029,314 - PS417_27945 0.85 +0.4 6,029,584 - PS417_27950 0.13 +0.4 6,029,599 - PS417_27950 0.16 -0.1 6,029,919 + PS417_27950 0.79 +0.4 6,029,919 + PS417_27950 0.79 +0.4 6,029,920 - PS417_27950 0.79 +1.0 6,029,920 - PS417_27950 0.79 -1.8 6,030,040 + +0.2 6,030,335 + PS417_27955 0.20 -0.5 6,030,335 + PS417_27955 0.20 +2.9 6,030,336 - PS417_27955 0.21 -1.0 6,030,471 - PS417_27955 0.30 -1.4 6,030,471 - PS417_27955 0.30 +1.4 6,030,483 - PS417_27955 0.30 +0.1 6,030,527 + PS417_27955 0.33 +1.2 6,030,527 + PS417_27955 0.33 +0.1 6,030,702 - PS417_27955 0.45 +0.5 6,030,857 + PS417_27955 0.55 -2.4 6,030,858 - PS417_27955 0.55 +0.1 6,030,858 - PS417_27955 0.55 -4.0
Or see this region's nucleotide sequence