Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27850 and PS417_27855 are separated by 6 nucleotides PS417_27855 and PS417_27860 overlap by 4 nucleotides PS417_27860 and PS417_27865 are separated by 221 nucleotides
PS417_27850: PS417_27850 - biopolymer transporter ExbB, at 6,003,559 to 6,004,539
_27850
PS417_27855: PS417_27855 - biopolymer transporter ExbD, at 6,004,546 to 6,004,971
_27855
PS417_27860: PS417_27860 - energy transducer TonB, at 6,004,968 to 6,005,717
_27860
PS417_27865: PS417_27865 - LysR family transcriptional regulator, at 6,005,939 to 6,006,859
_27865
Position (kb)
6004
6005
6006 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 6005.740 kb on + strand at 6005.741 kb on - strand at 6005.938 kb on + strand at 6005.955 kb on + strand at 6005.956 kb on - strand at 6005.956 kb on - strand at 6006.305 kb on + strand, within PS417_27865 at 6006.305 kb on + strand, within PS417_27865 at 6006.306 kb on - strand, within PS417_27865 at 6006.306 kb on - strand, within PS417_27865
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 6,005,740 + -1.2 6,005,741 - +0.3 6,005,938 + +0.5 6,005,955 + -5.0 6,005,956 - -3.9 6,005,956 - +0.1 6,006,305 + PS417_27865 0.40 -3.4 6,006,305 + PS417_27865 0.40 -2.3 6,006,306 - PS417_27865 0.40 -4.2 6,006,306 - PS417_27865 0.40 -2.1
Or see this region's nucleotide sequence