Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18015 and PS417_18020 are separated by 10 nucleotides PS417_18020 and PS417_18025 are separated by 231 nucleotides PS417_18025 and PS417_18035 are separated by 167 nucleotides
PS417_18015: PS417_18015 - membrane protein, at 3,928,358 to 3,929,131
_18015
PS417_18020: PS417_18020 - hypothetical protein, at 3,929,142 to 3,929,534
_18020
PS417_18025: PS417_18025 - cytochrome C, at 3,929,766 to 3,930,143
_18025
PS417_18035: PS417_18035 - general secretion pathway protein GspD, at 3,930,311 to 3,932,422
_18035
Position (kb)
3929
3930
3931 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 3929.151 kb on - strand at 3929.302 kb on + strand, within PS417_18020 at 3929.303 kb on - strand, within PS417_18020 at 3929.547 kb on - strand at 3929.623 kb on + strand at 3929.623 kb on + strand at 3929.643 kb on - strand at 3929.710 kb on - strand at 3929.722 kb on - strand at 3929.728 kb on + strand at 3929.857 kb on - strand, within PS417_18025 at 3929.858 kb on + strand, within PS417_18025 at 3929.859 kb on - strand, within PS417_18025 at 3929.859 kb on - strand, within PS417_18025 at 3930.007 kb on + strand, within PS417_18025 at 3930.008 kb on - strand, within PS417_18025 at 3930.008 kb on - strand at 3930.059 kb on - strand, within PS417_18025 at 3930.059 kb on - strand, within PS417_18025 at 3930.111 kb on + strand at 3930.302 kb on + strand at 3930.306 kb on + strand at 3930.306 kb on + strand at 3930.306 kb on + strand at 3930.307 kb on - strand at 3930.307 kb on - strand at 3930.307 kb on - strand at 3930.307 kb on - strand at 3930.307 kb on - strand at 3930.307 kb on - strand at 3930.307 kb on - strand at 3930.312 kb on + strand at 3930.312 kb on + strand at 3930.312 kb on + strand at 3930.313 kb on - strand at 3930.394 kb on + strand at 3930.394 kb on + strand at 3930.401 kb on - strand at 3930.483 kb on + strand at 3930.622 kb on + strand, within PS417_18035 at 3930.623 kb on - strand, within PS417_18035 at 3930.666 kb on + strand, within PS417_18035 at 3930.666 kb on + strand, within PS417_18035 at 3930.666 kb on + strand, within PS417_18035 at 3930.666 kb on + strand, within PS417_18035 at 3930.667 kb on - strand, within PS417_18035 at 3930.726 kb on + strand, within PS417_18035 at 3930.726 kb on + strand, within PS417_18035 at 3930.922 kb on - strand, within PS417_18035
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,929,151 - -1.0 3,929,302 + PS417_18020 0.41 -0.4 3,929,303 - PS417_18020 0.41 -0.6 3,929,547 - -0.2 3,929,623 + +0.1 3,929,623 + -0.5 3,929,643 - -0.6 3,929,710 - -0.1 3,929,722 - +2.4 3,929,728 + -1.1 3,929,857 - PS417_18025 0.24 -0.1 3,929,858 + PS417_18025 0.24 +1.1 3,929,859 - PS417_18025 0.25 -4.8 3,929,859 - PS417_18025 0.25 +0.4 3,930,007 + PS417_18025 0.64 -2.9 3,930,008 - PS417_18025 0.64 -0.4 3,930,008 - +3.4 3,930,059 - PS417_18025 0.78 -2.0 3,930,059 - PS417_18025 0.78 -1.6 3,930,111 + +1.3 3,930,302 + +1.2 3,930,306 + -2.1 3,930,306 + +0.6 3,930,306 + +0.2 3,930,307 - -1.3 3,930,307 - +1.5 3,930,307 - -0.3 3,930,307 - +0.9 3,930,307 - -0.9 3,930,307 - +1.3 3,930,307 - +0.0 3,930,312 + -2.7 3,930,312 + +0.7 3,930,312 + -0.6 3,930,313 - +0.2 3,930,394 + +0.9 3,930,394 + +0.6 3,930,401 - -0.6 3,930,483 + +0.2 3,930,622 + PS417_18035 0.15 -1.5 3,930,623 - PS417_18035 0.15 -2.3 3,930,666 + PS417_18035 0.17 +3.3 3,930,666 + PS417_18035 0.17 +0.9 3,930,666 + PS417_18035 0.17 -0.3 3,930,666 + PS417_18035 0.17 -1.2 3,930,667 - PS417_18035 0.17 -2.4 3,930,726 + PS417_18035 0.20 -0.4 3,930,726 + PS417_18035 0.20 +1.3 3,930,922 - PS417_18035 0.29 -1.0
Or see this region's nucleotide sequence