Strain Fitness in Pseudomonas simiae WCS417 around PS417_17815

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17810 and PS417_17815 are separated by 869 nucleotidesPS417_17815 and PS417_17820 are separated by 149 nucleotides PS417_17810: PS417_17810 - microcin B17-processing protein McbB, at 3,888,018 to 3,888,875 _17810 PS417_17815: PS417_17815 - hypothetical protein, at 3,889,745 to 3,889,975 _17815 PS417_17820: PS417_17820 - hypothetical protein, at 3,890,125 to 3,892,677 _17820 Position (kb) 3889 3890Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3888.869 kb on + strandat 3888.966 kb on + strandat 3888.967 kb on - strandat 3888.977 kb on + strandat 3889.002 kb on - strandat 3889.543 kb on + strandat 3889.690 kb on + strandat 3889.691 kb on - strandat 3890.108 kb on + strandat 3890.108 kb on + strandat 3890.109 kb on - strandat 3890.135 kb on - strandat 3890.167 kb on + strandat 3890.279 kb on + strandat 3890.301 kb on + strandat 3890.308 kb on + strandat 3890.363 kb on + strandat 3890.364 kb on - strandat 3890.431 kb on - strand, within PS417_17820at 3890.490 kb on - strand, within PS417_17820at 3890.490 kb on - strand, within PS417_17820at 3890.545 kb on - strandat 3890.546 kb on + strand, within PS417_17820at 3890.546 kb on + strand, within PS417_17820at 3890.546 kb on + strand, within PS417_17820at 3890.638 kb on + strand, within PS417_17820at 3890.779 kb on - strandat 3890.841 kb on + strand, within PS417_17820at 3890.842 kb on - strand, within PS417_17820at 3890.951 kb on + strand, within PS417_17820at 3890.969 kb on + strand, within PS417_17820at 3890.969 kb on + strand, within PS417_17820

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,888,869 + -0.3
3,888,966 + +0.1
3,888,967 - +0.9
3,888,977 + +0.5
3,889,002 - -1.7
3,889,543 + -2.5
3,889,690 + +0.1
3,889,691 - +1.3
3,890,108 + -1.7
3,890,108 + +1.5
3,890,109 - +0.8
3,890,135 - -1.1
3,890,167 + +0.3
3,890,279 + +1.0
3,890,301 + +1.4
3,890,308 + -0.2
3,890,363 + +0.1
3,890,364 - +0.6
3,890,431 - PS417_17820 0.12 +0.6
3,890,490 - PS417_17820 0.14 -0.4
3,890,490 - PS417_17820 0.14 -1.0
3,890,545 - +0.8
3,890,546 + PS417_17820 0.16 +0.7
3,890,546 + PS417_17820 0.16 -3.1
3,890,546 + PS417_17820 0.16 -0.3
3,890,638 + PS417_17820 0.20 -1.8
3,890,779 - +1.8
3,890,841 + PS417_17820 0.28 -0.1
3,890,842 - PS417_17820 0.28 +0.3
3,890,951 + PS417_17820 0.32 -0.3
3,890,969 + PS417_17820 0.33 -0.8
3,890,969 + PS417_17820 0.33 +0.4

Or see this region's nucleotide sequence